View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_low_20 (Length: 240)
Name: NF7584_low_20
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 2536673 - 2536463
Alignment:
| Q |
30 |
atacaatgaaccctcaaactagtagattattgaggcatcataatagttcagagaacacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttga |
129 |
Q |
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| T |
2536673 |
atacaatgaaccctcaaactagtagattattgatgcatcataataattcagagaacacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttga |
2536574 |
T |
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| Q |
130 |
aatccatttcaatgatttcccgatttgtttgagccaaacttaagctctctgtaactacatatacaaacatattggtatgataccattacaatcatcaaga |
229 |
Q |
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| T |
2536573 |
aatccatttcaaagatttccctatttgtttgagccaaacttaagctctctgtaactacatatacaaacatattggtatgataccattacaatcatcaaga |
2536474 |
T |
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| Q |
230 |
caacacaattt |
240 |
Q |
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| T |
2536473 |
caacacaattt |
2536463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 2532293 - 2532225
Alignment:
| Q |
68 |
cataatagttcagagaacacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttgaaatccatttcaa |
141 |
Q |
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| T |
2532293 |
cataatagttcaaagaacacaaccaacaaaagctcaacaaccaag-----tgcttgttttgaaatccatttcaa |
2532225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 45747309 - 45747239
Alignment:
| Q |
65 |
catcataatagttcagagaacacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttgaaatccatttca |
140 |
Q |
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| T |
45747309 |
catcataatagttcaaagaacacaagcaacaaaacttcaacaac-----caaatgcatgttttgaaatccatttca |
45747239 |
T |
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