View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_low_4 (Length: 530)
Name: NF7584_low_4
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 835898 - 836187
Alignment:
| Q |
15 |
tatcccccaatatcgaattggatgaaagtgaatgcaaatggtgccgtttctaatgctattgctgtttttg-agggctctttagagatgcaaatggctctt |
113 |
Q |
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| T |
835898 |
tatccctcaatatcgaattggatgaaagtgaatacaaatggtgccgtttctaatgctattgctgtttttggagggctctttagagatgcaaatggctctt |
835997 |
T |
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| Q |
114 |
gtcatggttgtttt-gcacggtgcctgggtgttgaatcaactctttatgctgaattgtttgcagttattttggttatagagctagtttactcgaaaggct |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
835998 |
gtcatggttgtttttgcacggtgcctgggtgttgaatcaactctttatgctgaattgtttgcagttattttggctatagagctagtttactcgaaaggct |
836097 |
T |
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| Q |
213 |
gctttaacctttggttagagactaactcaaaattggtcacattagcttttaataaggctacccttgttcccagacatattaggaacatat |
302 |
Q |
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| T |
836098 |
gctttaacctttggttagagactaactcaaaattggtcacattagcttttaataaggctacccttgttcccagacatattaggaacatat |
836187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 334 - 515
Target Start/End: Original strand, 836200 - 836381
Alignment:
| Q |
334 |
gcacctaattgtaactcatttatcagagaatataatttttgtgttgatacgctagctattataggactctctttatccaccttcacttgttgggatgata |
433 |
Q |
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| T |
836200 |
gcacctaattgtaactcatttatcagagaagataatttttgtgttgatacgctagctattataggactctctttatccactttcacttgttgggatgata |
836299 |
T |
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| Q |
434 |
ttccagactagatcataatagactttgtaaaaatagattaggcattcctaactatagatttattatcttttaaaaaggtttt |
515 |
Q |
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| T |
836300 |
tttcagactaggtcagaatagactttgtaaaaatagattagacattcctaactatagatttactatcttttgaaaaggtttt |
836381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 20733290 - 20733176
Alignment:
| Q |
238 |
ctcaaaattggtcacattagcttttaataaggctacccttgttcccagacatattaggaacatatggcttaactgtttggatttgattaacaacatgcac |
337 |
Q |
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| T |
20733290 |
ctcaaaattcatcacattagctttcaataaggctacacttgtcccctggcagattaggaacatatggtttaactgtatgaatttgattaacaacgtgcat |
20733191 |
T |
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| Q |
338 |
ctaattgtaactcat |
352 |
Q |
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| T |
20733190 |
ttaattgtaactcat |
20733176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 20733435 - 20733347
Alignment:
| Q |
84 |
gagggctctttagagatgcaaatggctcttgtcatggttgttttgcacggtgcctgggtgttgaatcaactctttatgctgaattgttt |
172 |
Q |
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| T |
20733435 |
gagggctctttagagatgtgaatggtacttgtcatggttgttctcggcagtgcatcggtattgaatcggctctttatgctgaactgttt |
20733347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 154 - 389
Target Start/End: Complemental strand, 56105894 - 56105656
Alignment:
| Q |
154 |
tctttatgctgaattgtttgcagttattttggttatagagctagtttactcgaaaggctgctttaacctttggttagagactaactcaaaattggtcaca |
253 |
Q |
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| T |
56105894 |
tctttatgctgaactatttgttgttattttggctatatagctagcttactccaaagtccggtttaacctttggctagagaccgactcaaaattggtcaca |
56105795 |
T |
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| Q |
254 |
ttagcttttaataaggctaccct-tgttcc-cagacatattaggaacatatggcttaactgtttggatttgattaacaacatgcacctaattgtaactca |
351 |
Q |
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| T |
56105794 |
ctagctttcaataaggctaatatatgcacctctgacagattaggaacatatggcttaactgtttgaatttgattaacaacatgcacctaattgtaactca |
56105695 |
T |
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| Q |
352 |
t-ttatcagagaatataatttttgtgttgatacgctagc |
389 |
Q |
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| || || |||| |||||| ||||||||||| |||||| |
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| T |
56105694 |
tatttacaaagaagataattcttgtgttgatatgctagc |
56105656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 155 - 352
Target Start/End: Original strand, 39689256 - 39689453
Alignment:
| Q |
155 |
ctttatgctgaattgtttgcagttattttggttatagagctagtttactcgaaaggctgctttaacctttggttagagactaactcaaaattggtcacat |
254 |
Q |
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|||||||| |||||||||| |||||||||| ||||||||||| |||||| ||||||| || |||||||||||||||| | ||| ||||||||||| |
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| T |
39689256 |
ctttatgcataattgtttgctgttattttggctatagagctagcttactccaaaggctagttcaacctttggttagagattgactgtaaattggtcacgc |
39689355 |
T |
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| Q |
255 |
tagcttttaataaggctacccttgttcccagacatattaggaacatatggcttaactgtttggatttgattaacaacatgcacctaattgtaactcat |
352 |
Q |
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| T |
39689356 |
tagctttcaacaaggctaccctggtcccctcgcagattaggaacagatggcttaactgtttaaatttgtttaagaacatgcatctaattgtaactcat |
39689453 |
T |
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