View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_low_8 (Length: 423)
Name: NF7584_low_8
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 44953731 - 44954096
Alignment:
| Q |
18 |
cttgcctttcttggggttcaatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtatacaa |
117 |
Q |
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| T |
44953731 |
cttgcctttcttggggttcaatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagattaagtatacaa |
44953830 |
T |
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| Q |
118 |
aaattgaagtataccgaagattgattgacatgagataaacataaaatttgagattccatgccaaatgataatgttcaatattaatagagttttataattg |
217 |
Q |
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| T |
44953831 |
aaattgaagtataccgaagattgattgacatgagataaacataaaatttgagattccatgccaaatgataatgttcaatattaatagagttttataattg |
44953930 |
T |
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| Q |
218 |
ttttatcattcacaagctcccatctatgttgttgttgtcgtcattgtgattaatgtttgactcttttttatgttatgtgaataaaattactcctctaatt |
317 |
Q |
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| T |
44953931 |
ttttatcattcacaagctctcatcta---tgttgttgtcgtcattgtgattaatgtttgactcttttgtatgttatgtgaataaaatacctcctctaatt |
44954027 |
T |
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| Q |
318 |
caatctgatacaatgatatttgaagggttgttcgatattgaacatgagttgtcatatctcttaagttag |
386 |
Q |
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| T |
44954028 |
caatctgatacaatgatatttgaagggttgttcgatattgaacatgagttgtcatatctcttaagttag |
44954096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 44994845 - 44994770
Alignment:
| Q |
39 |
tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtata |
114 |
Q |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44994845 |
tttatgtactactacatatgtcaatttctgacaaattgttgatatatttcaaacaggttgaaatagatgaagtata |
44994770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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