View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_low_9 (Length: 416)
Name: NF7584_low_9
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 143 - 402
Target Start/End: Original strand, 7035151 - 7035410
Alignment:
| Q |
143 |
atgcagatatccagtagtagcataagtttatttgtttatctcactctctttatgctgatattttctcctactagttccagccctgttcctcagataaaat |
242 |
Q |
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| T |
7035151 |
atgcagatatcctgtagtagcataagtttatttgtttatctcactctctttatgctgatattttctcctactagttccagccctgttcctcagataaaat |
7035250 |
T |
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| Q |
243 |
atgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctga |
342 |
Q |
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| T |
7035251 |
atgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctga |
7035350 |
T |
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| Q |
343 |
caagaagcttcgaggaggagatgaaatatcagaacttcatacagcaattgaaaaatcatt |
402 |
Q |
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| T |
7035351 |
caagaagcttcgaggaggagacgaaatatcagaacttcatacagcaattgaaaaatcatt |
7035410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 200 - 403
Target Start/End: Complemental strand, 7078722 - 7078519
Alignment:
| Q |
200 |
atattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatg |
299 |
Q |
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| T |
7078722 |
atattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatg |
7078623 |
T |
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| Q |
300 |
ttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagatgaaatatcagaacttcatacagcaattgaaaaatc |
399 |
Q |
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| T |
7078622 |
tcctcgaagctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatc |
7078523 |
T |
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| Q |
400 |
attc |
403 |
Q |
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|||| |
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| T |
7078522 |
attc |
7078519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7035016 - 7035100
Alignment:
| Q |
1 |
ggactaagtcggtactcattagtcaagtcatcaacagggcttaatctgatatctagcttgttgaatgcagctataatttaaagtc |
85 |
Q |
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| T |
7035016 |
ggactaagtcggtactcattagtcaagtcatcaacagggcttaatctgatatctagcttgttgaatgcagctataatttaaagtc |
7035100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 402
Target Start/End: Original strand, 7028505 - 7028708
Alignment:
| Q |
199 |
gatattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccat |
298 |
Q |
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| T |
7028505 |
gatattttctccttctacttctatccctgcacctcagataaaatatgatgtctttgttagctttagaggtagtgacattcgcaaaaatttccttagccat |
7028604 |
T |
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| Q |
299 |
gttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagatgaaatatcagaacttcatacagcaattgaaaaat |
398 |
Q |
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|| || || ||||| ||||||||| ||| | || ||||||||||| ||||| | |||||| ||| |||||| | |||| | |||||||||||||| |
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| T |
7028605 |
gtcctcgacgctttgtcgcgaaagggaatcattgttttttctgacaaaaagctaataacaggagacgaattatcagcaattcaaagagcaattgaaaaat |
7028704 |
T |
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| Q |
399 |
catt |
402 |
Q |
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|||| |
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| T |
7028705 |
catt |
7028708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 403
Target Start/End: Original strand, 7020934 - 7021106
Alignment:
| Q |
234 |
agataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagt |
333 |
Q |
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| T |
7020934 |
agataaaacatgatgtctttgttagcttcaggggtgaggatacccgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgt |
7021033 |
T |
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| Q |
334 |
cttttctgacaagaagcttcgaggaggagatgaaatatcag---aacttcatacagcaattgaaaaatcattc |
403 |
Q |
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|||||||||||||| ||| || |||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
7021034 |
attttctgacaagaaacttgaagaaggagatgaaatatcaccaaaacttaatgaagcaattgaaaaatcattc |
7021106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 7028415 - 7028456
Alignment:
| Q |
151 |
atccagtagtagcataagtttatttgtttatctcactctctt |
192 |
Q |
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| T |
7028415 |
atccagtagtagcataagtttgtttctttatctcactctctt |
7028456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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