View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7585_high_7 (Length: 359)

Name: NF7585_high_7
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7585_high_7
NF7585_high_7
[»] chr4 (8 HSPs)
chr4 (1-319)||(36374119-36374436)
chr4 (111-240)||(36417521-36417650)
chr4 (82-240)||(36426349-36426507)
chr4 (130-240)||(36412190-36412300)
chr4 (111-213)||(36388181-36388283)
chr4 (111-213)||(36404895-36404997)
chr4 (72-201)||(36434224-36434356)
chr4 (111-240)||(36397933-36398062)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 36374436 - 36374119
Alignment:
Q  1 atcgacttactgtaacaactgaaaacaaaaaactaataggacaacttttgtaagaaacgttgcaaataataatgaaatataaagaacagaggatattacc 100  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36374436 atcgacttactgtaacaactgata-caaaaaactaataggacaacttttgtaagaaacgttgcaaataataatgaaatataaagaacagaggatattatc 36374338  T
Q  101 cttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374337 cttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgca 36374238  T
Q  201 gaaaacctcttttgacctaggactcctttgcttcttttgtggttattggctttggctgataagaagaaaaaagtccaaggaatttcaattgcaccaaagt 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36374237 gaaatcctcttttgacctaggactcctttgcttcttttgtggttattggctttggctgataagaagaaaaaagtccaaggaatttcaattccaccaaagt 36374138  T
Q  301 gatgtcaaattaagaaagg 319  Q
    ||||||||| |||||||||    
T  36374137 gatgtcaaactaagaaagg 36374119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 36417650 - 36417521
Alignment:
Q  111 aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct 210  Q
    ||||||||||| |||||  ||||||||||| || ||  |||| || ||||||||| |||||| |||||| ||||||| || ||||||||||  |||||||    
T  36417650 aatcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctct 36417551  T
Q  211 tttgacctaggactcctttgcttcttttgt 240  Q
    ||| | | ||||||||||||||| ||||||    
T  36417550 ttttatcaaggactcctttgctttttttgt 36417521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 36426507 - 36426349
Alignment:
Q  82 aagaacagaggatattacccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgt 181  Q
    |||||||| |||||| | ||  |||| | ||| ||||||| |||||  ||||||||||| || ||  |||| || ||||||||| |||||| |||||| |    
T  36426507 aagaacaggggatatcatcccaaaaaataaattacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactat 36426408  T
Q  182 agaagcaaccagaattgcagaaaacctcttttgacctaggactcctttgcttcttttgt 240  Q
    |||||| || ||||||||||  ||||||||||  || ||||||||||||||| ||||||    
T  36426407 agaagctacaagaattgcagctaacctctttttgccaaggactcctttgctttttttgt 36426349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 36412300 - 36412190
Alignment:
Q  130 ttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctcttttgacctaggactccttt 229  Q
    ||||||||||| || ||  |||| || ||||||||| |||||| |||||| ||||||| || ||||||||||  |||||||||| | | |||||||||||    
T  36412300 ttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaaggactccttt 36412201  T
Q  230 gcttcttttgt 240  Q
    |||| ||||||    
T  36412200 gctttttttgt 36412190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 36388283 - 36388181
Alignment:
Q  111 aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct 210  Q
    ||||||||||| |  ||| ||||||||||| || |   |||| ||||||||||||||||||| |||| | ||||||| || ||||||||||  |||||||    
T  36388283 aatcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagccaacctct 36388184  T
Q  211 ttt 213  Q
    |||    
T  36388183 ttt 36388181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 36404997 - 36404895
Alignment:
Q  111 aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct 210  Q
    |||| |||||| ||| || ||||||||||| || ||   ||| |||||||||||| |||||| |||||  ||||||| |||||||||||||  |||||||    
T  36404997 aatcgcataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagccaacctct 36404898  T
Q  211 ttt 213  Q
    |||    
T  36404897 ttt 36404895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 36434356 - 36434224
Alignment:
Q  72 atgaaatataaagaacagaggatattacccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggac-- 169  Q
    |||||||||||||| | |  ||||| | |||||||| | ||| ||||||| ||| || ||||||||||| ||||| ||||| ||||||||| ||||||      
T  36434356 atgaaatataaagatctggagatatcatccttaaaaataaattacataccctttgtttttttcttccacttgcaatacacacaggagaggacgaggacga 36434257  T
Q  170 -aatcgcaactgtagaagcaaccagaattgcag 201  Q
     ||  |||||| ||||||| |||| ||||||||    
T  36434256 taacagcaactatagaagctaccaaaattgcag 36434224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 36398062 - 36397933
Alignment:
Q  111 aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct 210  Q
    ||||||||||| |||||| ||||||||||| || ||  |||| | |||||||| | ||| || |||||| | ||| | |||| |||| |||  |||||||    
T  36398062 aatcacataccctttctttttttcttccacatgtaattcacacaagagaggagaatgacgattgcaactattgaaactaccataattacagccaacctct 36397963  T
Q  211 tttgacctaggactcctttgcttcttttgt 240  Q
    ||| | | ||||||||||||||| ||||||    
T  36397962 ttttatcaaggactcctttgctttttttgt 36397933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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