View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7585_low_1 (Length: 575)
Name: NF7585_low_1
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7585_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 50 - 557
Target Start/End: Original strand, 10267588 - 10268105
Alignment:
| Q |
50 |
aaaaggaacatacttttcacgaatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaaca |
149 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10267588 |
aaaagaaacatacttttcacgaatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaaca |
10267687 |
T |
|
| Q |
150 |
ttaagggctactttggtaataacatggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttg |
249 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
10267688 |
ttaagggctactttggtaataacgtggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgtgtcacttcccattggtgttg |
10267787 |
T |
|
| Q |
250 |
ccattgaaa----------ttctagcttgatttctgaaattcaaacacaaagatgaactttttggtaacatgatagagaaatagagaggaattgttaatt |
339 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10267788 |
ccattgaaaaacaccaaaattctagcttgatttctgaaattcaaacacaaagatgagctttttggtaacatgatagagaaatagagaggaattgttaatt |
10267887 |
T |
|
| Q |
340 |
gagttggtgatggttgaagggaacagataccaaacctgatggttcctttccttcgtgttaaagtcacaaaactatgaggcaaaacaagattaaaattctt |
439 |
Q |
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| T |
10267888 |
gggttggtgatggttgaagggaacagataccaaacctgatggttcctttccttcgtgttaaagtcacaaaactatgaggcaaaacaagattaaaattctt |
10267987 |
T |
|
| Q |
440 |
tatgaaaacttaaaaaacacggattcatgcacctttgttatcgatgaaggaagcaaagggtatggatttaaacaagctatctatcatatggaaggtagaa |
539 |
Q |
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| T |
10267988 |
tatgaaaacttaaaaaacacggattcatgcacctttgttatcgatgaaggaagcagagggtatggatttaaacaagctatctatcatatggaaggtagaa |
10268087 |
T |
|
| Q |
540 |
atgggaaacactcttttc |
557 |
Q |
| |
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|||||||||||||||||| |
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| T |
10268088 |
atgggaaacactcttttc |
10268105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 10284835 - 10284691
Alignment:
| Q |
99 |
agagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctgca |
198 |
Q |
| |
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|||||||| ||||| || |||| ||| || || || || || || ||| |||||||||| || || ||||| |||||||| ||||||||||||||||| | |
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| T |
10284835 |
agagcaaggagatccctatagaagcagaagactaattggttgactccagcattaagggccaccttagtaatgacatggtagccaccattgaatagctgta |
10284736 |
T |
|
| Q |
199 |
ccattgccatagccaaatgggctttccatgcgtcacttcccattg |
243 |
Q |
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| | |||||| |||||||||| |||||||| ||||||||||||| |
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| T |
10284735 |
caactgccatgcccaaatgggccttccatgcttcacttcccattg |
10284691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 10283028 - 10283130
Alignment:
| Q |
99 |
agagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctgca |
198 |
Q |
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|||||||| |||||||| |||| ||| || || | || || || |||||||||||||| |||||||| || |||||||| ||||||| |||| ||||| |
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| T |
10283028 |
agagcaaggagatctctatagaagcagaagacaagttggttgactccaacattaagggcaactttggtgatgacatggtagccaccatataataactgca |
10283127 |
T |
|
| Q |
199 |
cca |
201 |
Q |
| |
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||| |
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| T |
10283128 |
cca |
10283130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 10267521 - 10267550
Alignment:
| Q |
16 |
atccaaacccagataaagaaatcaacaaaa |
45 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10267521 |
atccaaacccagataaagaaatcaacaaaa |
10267550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 10292590 - 10292502
Alignment:
| Q |
108 |
agatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctg |
196 |
Q |
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|||||||| |||| ||| || || || ||||| || ||| ||| ||||||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
10292590 |
agatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacatagtatccaccattgaaaagctg |
10292502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 166 - 283
Target Start/End: Original strand, 41883551 - 41883668
Alignment:
| Q |
166 |
taataacatggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattgaaattctagc |
265 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
41883551 |
taataacatggtaaccaccattgaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaattctagc |
41883650 |
T |
|
| Q |
266 |
ttgatttctgaaattcaa |
283 |
Q |
| |
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|| ||||||||||||||| |
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| T |
41883651 |
ttaatttctgaaattcaa |
41883668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 41883674 - 41883717
Alignment:
| Q |
367 |
taccaaacctgatggttcctttccttcgtgttaaagtcacaaaa |
410 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
41883674 |
taccaaacctgatggctcctttccttcatgttaaagtcacaaaa |
41883717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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