View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7585_low_10 (Length: 310)
Name: NF7585_low_10
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7585_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 46 - 295
Target Start/End: Complemental strand, 15639929 - 15639680
Alignment:
| Q |
46 |
aaatgtactaattaatagttacaatgatattattgtgcagtgtatttgcattgttaagtctacacttgttcatgtatggatgcaacctttacatgtggaa |
145 |
Q |
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| T |
15639929 |
aaatgtactaatgaatggttacaatgatattattatgcagtgtatttgcattgttaagtctacacttgttcatgtatggatgcaacctttacatgtggaa |
15639830 |
T |
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| Q |
146 |
ggctacaagaatcaatcacaatttcatatttgaattctcaccaagcacagcattaaagcatagagatgcatttcttatgtgcactgtattcatgactgct |
245 |
Q |
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| T |
15639829 |
ggctacaagaatcaatcacaatttcatctttgaattctcaccaagcacagcattaaagcatagagatgcatttcttatgtgcactgtattcatgactgct |
15639730 |
T |
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| Q |
246 |
gtggttgggtcaatggttgtacaccttcttcttagggctgcagggttttt |
295 |
Q |
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| T |
15639729 |
gtggttgggtcaatggttgtacaccttcttcttagggctgcagggttttt |
15639680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 294
Target Start/End: Original strand, 33518879 - 33519095
Alignment:
| Q |
78 |
ttgtgcagtgtatttgcattgttaagtctacacttgttcatgtatggatgcaacctttacatgtggaaggctacaagaatcaatcacaatttcatatttg |
177 |
Q |
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| T |
33518879 |
ttgtgcagtgtgtttgcattgctaagcctgcacttatttatgtatggatgtaatctatatatgtggaagagaacaagaatcaattacaacttcatttttg |
33518978 |
T |
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| Q |
178 |
aattctcaccaagcacagcattaaagcatagagatgcatttcttatgtgcactgtattcatgactgctgtggttgggtcaatggttgtacaccttcttct |
277 |
Q |
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| T |
33518979 |
aattctccccaaggacatcacttaagcatagagatgcatttttgatatgcactaccttaatgacaactgtggttgcagcaatggttatgcaccttctttt |
33519078 |
T |
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| Q |
278 |
tagggctgcagggtttt |
294 |
Q |
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| T |
33519079 |
aagggctgcaggatttt |
33519095 |
T |
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