View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7585_low_11 (Length: 302)

Name: NF7585_low_11
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7585_low_11
NF7585_low_11
[»] chr8 (7 HSPs)
chr8 (16-48)||(24430571-24430603)
chr8 (17-48)||(513417-513448)
chr8 (17-48)||(15847222-15847253)
chr8 (17-48)||(41536527-41536558)
chr8 (18-48)||(3876019-3876049)
chr8 (18-48)||(28496355-28496385)
chr8 (18-47)||(24193131-24193160)
[»] chr3 (10 HSPs)
chr3 (16-48)||(42107099-42107131)
chr3 (17-48)||(1017154-1017185)
chr3 (17-48)||(1687761-1687792)
chr3 (17-48)||(21564606-21564637)
chr3 (17-48)||(44798377-44798408)
chr3 (17-48)||(50287676-50287707)
chr3 (18-48)||(33151807-33151837)
chr3 (18-48)||(37248067-37248097)
chr3 (19-48)||(10618480-10618509)
chr3 (16-48)||(3697255-3697287)
[»] chr2 (15 HSPs)
chr2 (16-48)||(9331865-9331897)
chr2 (17-48)||(921132-921163)
chr2 (17-48)||(2094410-2094441)
chr2 (17-48)||(9276684-9276715)
chr2 (17-48)||(11949426-11949457)
chr2 (17-48)||(16246193-16246224)
chr2 (17-48)||(17484550-17484581)
chr2 (17-48)||(27328694-27328725)
chr2 (17-48)||(28650426-28650457)
chr2 (17-48)||(34253252-34253283)
chr2 (17-48)||(37838407-37838438)
chr2 (17-48)||(40854719-40854750)
chr2 (18-48)||(12759750-12759780)
chr2 (17-47)||(17134339-17134369)
chr2 (16-48)||(19180530-19180562)
[»] scaffold0004 (1 HSPs)
scaffold0004 (17-48)||(218996-219027)
[»] chr7 (18 HSPs)
chr7 (17-48)||(221385-221416)
chr7 (17-48)||(1469493-1469524)
chr7 (17-48)||(2960640-2960671)
chr7 (17-48)||(11050261-11050292)
chr7 (17-48)||(11476556-11476587)
chr7 (17-48)||(23842415-23842446)
chr7 (17-48)||(31684134-31684165)
chr7 (17-48)||(37393998-37394029)
chr7 (17-48)||(42888959-42888990)
chr7 (17-48)||(43752776-43752807)
chr7 (17-48)||(43968259-43968290)
chr7 (17-48)||(47294291-47294322)
chr7 (17-47)||(44544519-44544549)
chr7 (17-47)||(47219255-47219285)
chr7 (18-48)||(47272092-47272122)
chr7 (18-48)||(47281124-47281154)
chr7 (18-48)||(48628916-48628946)
chr7 (20-48)||(47120106-47120134)
[»] chr6 (11 HSPs)
chr6 (17-48)||(10256347-10256378)
chr6 (17-48)||(12612971-12613002)
chr6 (17-48)||(12626746-12626777)
chr6 (17-48)||(29050382-29050413)
chr6 (17-48)||(30379127-30379158)
chr6 (17-48)||(31376027-31376058)
chr6 (18-48)||(2390376-2390406)
chr6 (18-48)||(2707570-2707600)
chr6 (18-48)||(17428272-17428302)
chr6 (18-47)||(6503829-6503858)
chr6 (16-48)||(3408298-3408330)
[»] chr5 (13 HSPs)
chr5 (17-48)||(6252082-6252113)
chr5 (17-48)||(6600136-6600167)
chr5 (17-48)||(8216010-8216041)
chr5 (17-48)||(11000728-11000759)
chr5 (17-48)||(14717715-14717746)
chr5 (17-48)||(16095960-16095991)
chr5 (17-48)||(20408643-20408674)
chr5 (17-48)||(30297749-30297780)
chr5 (17-48)||(33760470-33760501)
chr5 (18-48)||(3352002-3352032)
chr5 (18-48)||(6739955-6739985)
chr5 (18-48)||(11935556-11935586)
chr5 (19-48)||(39824668-39824697)
[»] chr4 (16 HSPs)
chr4 (17-48)||(5227500-5227531)
chr4 (17-48)||(17847096-17847127)
chr4 (17-48)||(26017533-26017564)
chr4 (17-48)||(28264753-28264784)
chr4 (17-48)||(28812287-28812318)
chr4 (17-48)||(31208854-31208885)
chr4 (17-48)||(31591185-31591216)
chr4 (17-48)||(33807780-33807811)
chr4 (17-48)||(42273912-42273943)
chr4 (17-48)||(49118721-49118752)
chr4 (17-48)||(50276138-50276169)
chr4 (18-48)||(4544985-4545015)
chr4 (18-48)||(23135006-23135036)
chr4 (17-47)||(40988743-40988773)
chr4 (18-48)||(44490430-44490460)
chr4 (18-48)||(56555165-56555195)
[»] chr1 (19 HSPs)
chr1 (17-48)||(8141486-8141517)
chr1 (17-48)||(18892439-18892470)
chr1 (17-48)||(25988271-25988302)
chr1 (115-146)||(26070100-26070131)
chr1 (17-48)||(36157678-36157709)
chr1 (17-48)||(37217006-37217037)
chr1 (17-48)||(41106126-41106157)
chr1 (17-48)||(46095075-46095106)
chr1 (17-48)||(46825641-46825672)
chr1 (17-48)||(48669396-48669427)
chr1 (17-48)||(49094711-49094742)
chr1 (18-48)||(12143183-12143213)
chr1 (18-48)||(33325838-33325868)
chr1 (18-48)||(38473626-38473656)
chr1 (18-48)||(45670486-45670516)
chr1 (18-47)||(19274670-19274699)
chr1 (19-48)||(21965177-21965206)
chr1 (114-142)||(7609062-7609090)
chr1 (17-45)||(24204474-24204502)


Alignment Details
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 24430603 - 24430571
Alignment:
Q  16 actatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||||    
T  24430603 actatctacaataggacttgtttgaaacgattc 24430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 513417 - 513448
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  513417 ctatctacaataggacttgtttgaaacgattc 513448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 15847222 - 15847253
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  15847222 ctatctacaataggacttgtttgaaacgattc 15847253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 41536558 - 41536527
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  41536558 ctatctacaataggacttgtttgaaacgattc 41536527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 3876019 - 3876049
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  3876019 tatctacaataggacttgtttgaaacgattc 3876049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 28496385 - 28496355
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  28496385 tatctacaataggacttgtttgaaacgattc 28496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 24193160 - 24193131
Alignment:
Q  18 tatctacaataggacttgtttgaaacgatt 47  Q
    ||||||||||||||||||||||||||||||    
T  24193160 tatctacaataggacttgtttgaaacgatt 24193131  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 42107131 - 42107099
Alignment:
Q  16 actatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||||    
T  42107131 actatctacaataggacttgtttgaaacgattc 42107099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 1017154 - 1017185
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  1017154 ctatctacaataggacttgtttgaaacgattc 1017185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 1687761 - 1687792
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  1687761 ctatctacaataggacttgtttgaaacgattc 1687792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 21564606 - 21564637
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  21564606 ctatctacaataggacttgtttgaaacgattc 21564637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 44798377 - 44798408
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  44798377 ctatctacaataggacttgtttgaaacgattc 44798408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 50287676 - 50287707
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  50287676 ctatctacaataggacttgtttgaaacgattc 50287707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 33151807 - 33151837
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  33151807 tatctacaataggacttgtttgaaacgattc 33151837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 37248067 - 37248097
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  37248067 tatctacaataggacttgtttgaaacgattc 37248097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 10618509 - 10618480
Alignment:
Q  19 atctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||    
T  10618509 atctacaataggacttgtttgaaacgattc 10618480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 3697255 - 3697287
Alignment:
Q  16 actatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||| |||||    
T  3697255 actatctacaataggacttgtttgaaaggattc 3697287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 9331865 - 9331897
Alignment:
Q  16 actatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||||    
T  9331865 actatctacaataggacttgtttgaaacgattc 9331897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 921132 - 921163
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  921132 ctatctacaataggacttgtttgaaacgattc 921163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 2094441 - 2094410
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  2094441 ctatctacaataggacttgtttgaaacgattc 2094410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 9276684 - 9276715
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  9276684 ctatctacaataggacttgtttgaaacgattc 9276715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 11949457 - 11949426
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  11949457 ctatctacaataggacttgtttgaaacgattc 11949426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 16246224 - 16246193
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  16246224 ctatctacaataggacttgtttgaaacgattc 16246193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 17484581 - 17484550
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  17484581 ctatctacaataggacttgtttgaaacgattc 17484550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 27328694 - 27328725
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  27328694 ctatctacaataggacttgtttgaaacgattc 27328725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 28650457 - 28650426
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  28650457 ctatctacaataggacttgtttgaaacgattc 28650426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 34253252 - 34253283
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  34253252 ctatctacaataggacttgtttgaaacgattc 34253283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 37838407 - 37838438
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  37838407 ctatctacaataggacttgtttgaaacgattc 37838438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 40854719 - 40854750
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  40854719 ctatctacaataggacttgtttgaaacgattc 40854750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 12759780 - 12759750
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  12759780 tatctacaataggacttgtttgaaacgattc 12759750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 17134339 - 17134369
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgatt 47  Q
    |||||||||||||||||||||||||||||||    
T  17134339 ctatctacaataggacttgtttgaaacgatt 17134369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 19180530 - 19180562
Alignment:
Q  16 actatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||| |||||||||||||||||||    
T  19180530 actatctacaataagacttgtttgaaacgattc 19180562  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 218996 - 219027
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  218996 ctatctacaataggacttgtttgaaacgattc 219027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 221385 - 221416
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  221385 ctatctacaataggacttgtttgaaacgattc 221416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 1469524 - 1469493
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  1469524 ctatctacaataggacttgtttgaaacgattc 1469493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 2960671 - 2960640
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  2960671 ctatctacaataggacttgtttgaaacgattc 2960640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 11050292 - 11050261
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  11050292 ctatctacaataggacttgtttgaaacgattc 11050261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 11476587 - 11476556
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  11476587 ctatctacaataggacttgtttgaaacgattc 11476556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 23842415 - 23842446
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  23842415 ctatctacaataggacttgtttgaaacgattc 23842446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 31684165 - 31684134
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  31684165 ctatctacaataggacttgtttgaaacgattc 31684134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 37394029 - 37393998
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  37394029 ctatctacaataggacttgtttgaaacgattc 37393998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 42888959 - 42888990
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  42888959 ctatctacaataggacttgtttgaaacgattc 42888990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 43752807 - 43752776
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  43752807 ctatctacaataggacttgtttgaaacgattc 43752776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 43968290 - 43968259
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  43968290 ctatctacaataggacttgtttgaaacgattc 43968259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 47294322 - 47294291
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  47294322 ctatctacaataggacttgtttgaaacgattc 47294291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 44544519 - 44544549
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgatt 47  Q
    |||||||||||||||||||||||||||||||    
T  44544519 ctatctacaataggacttgtttgaaacgatt 44544549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 47219255 - 47219285
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgatt 47  Q
    |||||||||||||||||||||||||||||||    
T  47219255 ctatctacaataggacttgtttgaaacgatt 47219285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 47272092 - 47272122
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  47272092 tatctacaataggacttgtttgaaacgattc 47272122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 47281154 - 47281124
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  47281154 tatctacaataggacttgtttgaaacgattc 47281124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 48628916 - 48628946
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  48628916 tatctacaataggacttgtttgaaacgattc 48628946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 47120106 - 47120134
Alignment:
Q  20 tctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||    
T  47120106 tctacaataggacttgtttgaaacgattc 47120134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 10256347 - 10256378
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  10256347 ctatctacaataggacttgtttgaaacgattc 10256378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 12613002 - 12612971
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  12613002 ctatctacaataggacttgtttgaaacgattc 12612971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 12626746 - 12626777
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  12626746 ctatctacaataggacttgtttgaaacgattc 12626777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 29050382 - 29050413
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  29050382 ctatctacaataggacttgtttgaaacgattc 29050413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 30379127 - 30379158
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  30379127 ctatctacaataggacttgtttgaaacgattc 30379158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 31376027 - 31376058
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  31376027 ctatctacaataggacttgtttgaaacgattc 31376058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 2390376 - 2390406
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  2390376 tatctacaataggacttgtttgaaacgattc 2390406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 2707570 - 2707600
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  2707570 tatctacaataggacttgtttgaaacgattc 2707600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 17428302 - 17428272
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  17428302 tatctacaataggacttgtttgaaacgattc 17428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 6503829 - 6503858
Alignment:
Q  18 tatctacaataggacttgtttgaaacgatt 47  Q
    ||||||||||||||||||||||||||||||    
T  6503829 tatctacaataggacttgtttgaaacgatt 6503858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 3408298 - 3408330
Alignment:
Q  16 actatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||| |||||||||||||||||||    
T  3408298 actatctacaatatgacttgtttgaaacgattc 3408330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 6252082 - 6252113
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  6252082 ctatctacaataggacttgtttgaaacgattc 6252113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 6600167 - 6600136
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  6600167 ctatctacaataggacttgtttgaaacgattc 6600136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 8216010 - 8216041
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  8216010 ctatctacaataggacttgtttgaaacgattc 8216041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 11000759 - 11000728
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  11000759 ctatctacaataggacttgtttgaaacgattc 11000728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 14717715 - 14717746
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  14717715 ctatctacaataggacttgtttgaaacgattc 14717746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 16095991 - 16095960
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  16095991 ctatctacaataggacttgtttgaaacgattc 16095960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 20408643 - 20408674
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  20408643 ctatctacaataggacttgtttgaaacgattc 20408674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 30297780 - 30297749
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  30297780 ctatctacaataggacttgtttgaaacgattc 30297749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 33760501 - 33760470
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  33760501 ctatctacaataggacttgtttgaaacgattc 33760470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 3352032 - 3352002
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  3352032 tatctacaataggacttgtttgaaacgattc 3352002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 6739985 - 6739955
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  6739985 tatctacaataggacttgtttgaaacgattc 6739955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 11935556 - 11935586
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  11935556 tatctacaataggacttgtttgaaacgattc 11935586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 39824668 - 39824697
Alignment:
Q  19 atctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||    
T  39824668 atctacaataggacttgtttgaaacgattc 39824697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 5227500 - 5227531
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  5227500 ctatctacaataggacttgtttgaaacgattc 5227531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 17847127 - 17847096
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  17847127 ctatctacaataggacttgtttgaaacgattc 17847096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 26017533 - 26017564
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  26017533 ctatctacaataggacttgtttgaaacgattc 26017564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 28264753 - 28264784
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  28264753 ctatctacaataggacttgtttgaaacgattc 28264784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 28812318 - 28812287
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  28812318 ctatctacaataggacttgtttgaaacgattc 28812287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 31208854 - 31208885
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  31208854 ctatctacaataggacttgtttgaaacgattc 31208885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 31591185 - 31591216
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  31591185 ctatctacaataggacttgtttgaaacgattc 31591216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 33807811 - 33807780
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  33807811 ctatctacaataggacttgtttgaaacgattc 33807780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 42273912 - 42273943
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  42273912 ctatctacaataggacttgtttgaaacgattc 42273943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 49118721 - 49118752
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  49118721 ctatctacaataggacttgtttgaaacgattc 49118752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 50276169 - 50276138
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  50276169 ctatctacaataggacttgtttgaaacgattc 50276138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 4545015 - 4544985
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  4545015 tatctacaataggacttgtttgaaacgattc 4544985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 23135036 - 23135006
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  23135036 tatctacaataggacttgtttgaaacgattc 23135006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 40988743 - 40988773
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgatt 47  Q
    |||||||||||||||||||||||||||||||    
T  40988743 ctatctacaataggacttgtttgaaacgatt 40988773  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 44490430 - 44490460
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  44490430 tatctacaataggacttgtttgaaacgattc 44490460  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 56555195 - 56555165
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  56555195 tatctacaataggacttgtttgaaacgattc 56555165  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 8141517 - 8141486
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  8141517 ctatctacaataggacttgtttgaaacgattc 8141486  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 18892439 - 18892470
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  18892439 ctatctacaataggacttgtttgaaacgattc 18892470  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 25988302 - 25988271
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  25988302 ctatctacaataggacttgtttgaaacgattc 25988271  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 26070100 - 26070131
Alignment:
Q  115 ttaaaggacctttaaatacatttgacctatat 146  Q
    ||||||||||||||||||||||||||||||||    
T  26070100 ttaaaggacctttaaatacatttgacctatat 26070131  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 36157709 - 36157678
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  36157709 ctatctacaataggacttgtttgaaacgattc 36157678  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 37217006 - 37217037
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  37217006 ctatctacaataggacttgtttgaaacgattc 37217037  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 41106126 - 41106157
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  41106126 ctatctacaataggacttgtttgaaacgattc 41106157  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 46095106 - 46095075
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  46095106 ctatctacaataggacttgtttgaaacgattc 46095075  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 46825641 - 46825672
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  46825641 ctatctacaataggacttgtttgaaacgattc 46825672  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 48669427 - 48669396
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  48669427 ctatctacaataggacttgtttgaaacgattc 48669396  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 49094742 - 49094711
Alignment:
Q  17 ctatctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||||    
T  49094742 ctatctacaataggacttgtttgaaacgattc 49094711  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 12143183 - 12143213
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  12143183 tatctacaataggacttgtttgaaacgattc 12143213  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 33325838 - 33325868
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  33325838 tatctacaataggacttgtttgaaacgattc 33325868  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 38473656 - 38473626
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  38473656 tatctacaataggacttgtttgaaacgattc 38473626  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 45670516 - 45670486
Alignment:
Q  18 tatctacaataggacttgtttgaaacgattc 48  Q
    |||||||||||||||||||||||||||||||    
T  45670516 tatctacaataggacttgtttgaaacgattc 45670486  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 19274670 - 19274699
Alignment:
Q  18 tatctacaataggacttgtttgaaacgatt 47  Q
    ||||||||||||||||||||||||||||||    
T  19274670 tatctacaataggacttgtttgaaacgatt 19274699  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 21965177 - 21965206
Alignment:
Q  19 atctacaataggacttgtttgaaacgattc 48  Q
    ||||||||||||||||||||||||||||||    
T  21965177 atctacaataggacttgtttgaaacgattc 21965206  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 7609062 - 7609090
Alignment:
Q  114 cttaaaggacctttaaatacatttgacct 142  Q
    |||||||||||||||||||||||||||||    
T  7609062 cttaaaggacctttaaatacatttgacct 7609090  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 24204502 - 24204474
Alignment:
Q  17 ctatctacaataggacttgtttgaaacga 45  Q
    |||||||||||||||||||||||||||||    
T  24204502 ctatctacaataggacttgtttgaaacga 24204474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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