View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7585_low_12 (Length: 285)
Name: NF7585_low_12
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7585_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 3159244 - 3159390
Alignment:
| Q |
132 |
catgaaagccgtagaaattgttgttgagcaaggttggaggaacctttggatagaatctgattctcggttagtggtgcttgcttttaagaagaaatctttg |
231 |
Q |
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| T |
3159244 |
catgaaagccgtagaaattgttgttgagcaaggttggaggaacctttggatagaatctgattctcggttagtggtgcttgcttttaagaagaaatctttg |
3159343 |
T |
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| Q |
232 |
gtgccttggaaaacaagcagccactagaaaaaatgtttggatctttg |
278 |
Q |
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| T |
3159344 |
gtgccttggtaaacaagcagccactagaaaaaatgtttggatctttg |
3159390 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 3159032 - 3159089
Alignment:
| Q |
16 |
attcattcctccaaagctctacctatcaaggaagttctttggcatcctcccatacatg |
73 |
Q |
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| T |
3159032 |
attcattcctccaaagctctacctatcaaggaagttctttggcatcctcccatacatg |
3159089 |
T |
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