View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7585_low_2 (Length: 458)
Name: NF7585_low_2
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7585_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 36639771 - 36639343
Alignment:
| Q |
19 |
atgtgacagagccgtcttatatattttgttgtcgaaaatcacctggttgcaggtgctgccatatgcaaaatctatcttaaaaaatatgatatcaaaagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639771 |
atgtgacagagccgtcttatatatttggttgtcgaaaattacctggttgcaggtgctgccatatgcaaaatctatcttaaaaaatatgatatcaaaagtt |
36639672 |
T |
|
| Q |
119 |
aataaagaactataaaaagtagaaaggatatgatatgattttatattattat---gatttgatttggaatgtcaaataaagataggaggagcatcaatat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639671 |
aataaagaactataaaaagtagaaaggatatgatatgattttatattattattatgatttgatttggaatgtcaaataaagataggaggagcatcaatat |
36639572 |
T |
|
| Q |
216 |
atacgtcatgtttcctttctgagtctctacaacttttttggggatgtggccatatctgattctctctgtcgcataatctgcttacatgatttcacttttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639571 |
atacgtcatgtttcctttctgagtctatacaacttttttggggatgtggccatatctgattctctctgtcgcataatctgcttacatgatttcacttttg |
36639472 |
T |
|
| Q |
316 |
tatattccaatttgtaagaattatttactaaatttttactcaagttcaaaattaaagagtatcattgaaggtcttcgtccgatttttctatgaatcttta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36639471 |
tatattccaatttgtaagaattatttactaaatttttactcaagttcaaaattaaagagtatcattgaaggtcttcatccgatttttctatgaatcttta |
36639372 |
T |
|
| Q |
416 |
ctacagtattataataataacatgcacatttcat |
449 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
36639371 |
c-----tattataataataacatgcacatttcat |
36639343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University