View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7585_low_4 (Length: 411)

Name: NF7585_low_4
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7585_low_4
NF7585_low_4
[»] chr3 (18 HSPs)
chr3 (80-388)||(28047951-28048259)
chr3 (152-388)||(28144415-28144651)
chr3 (143-388)||(27910320-27910565)
chr3 (85-388)||(27999115-27999421)
chr3 (150-388)||(19049988-19050226)
chr3 (103-388)||(28178564-28178840)
chr3 (150-388)||(17748668-17748906)
chr3 (80-383)||(27463626-27463929)
chr3 (80-274)||(27967900-27968094)
chr3 (80-388)||(28079941-28080240)
chr3 (157-383)||(28130492-28130700)
chr3 (80-388)||(28471596-28471892)
chr3 (80-388)||(28491637-28491933)
chr3 (80-268)||(28512642-28512830)
chr3 (150-241)||(11409457-11409548)
chr3 (282-388)||(27963273-27963379)
chr3 (279-388)||(11409328-11409437)
chr3 (297-341)||(28512847-28512891)
[»] chr4 (2 HSPs)
chr4 (80-388)||(9329344-9329658)
chr4 (80-388)||(9383127-9383441)
[»] chr7 (1 HSPs)
chr7 (111-316)||(8693983-8694188)
[»] scaffold0854 (1 HSPs)
scaffold0854 (93-136)||(3699-3742)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 80 - 388
Target Start/End: Complemental strand, 28048259 - 28047951
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 179  Q
    ||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||| ||||||     ||||||||||| ||||||||||||||||||    
T  28048259 ttaccattaagttgtcttgcggttgatcctcataaaccaatgggattttagtacttgtggtactcctcaatttgtgcccatcttttttaccacaacaata 28048160  T
Q  180 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaa 279  Q
    ||||||| |||||||||| ||||||||||| ||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||   ||    
T  28048159 tatatcagtccatgaaaacatattgcatttaattgactctgattgtgcttgtggcttggaagtatctccagaaatggaagatgacctcttaatggacaaa 28048060  T
Q  280 gtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaata 379  Q
    | ||| ||| |||||| |||| |||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||| ||||||||    
T  28048059 gacattgtaggattacattcttggaaaatgtcaatgaaatttggtaaaccatcaagcctcatttcttttaaagaaccaaatttgacatctttgccaaata 28047960  T
Q  380 tgtaattca 388  Q
    |||| ||||    
T  28047959 tgtatttca 28047951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 152 - 388
Target Start/End: Complemental strand, 28144651 - 28144415
Alignment:
Q  152 tgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccaga 251  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  28144651 tgtgcccatatattttaccacaacaatatatatcagtccatgaaaacatattgcatttgattggctctgattgttcttgtggcttggaagcatctccaga 28144552  T
Q  252 aatggaagatgacctcttaatgggtgaagtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttaga 351  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||| | ||| ||||| ||||  ||| ||     
T  28144551 aatggaagatgacctcttaatggatgaagtcatggtacgattacattttgggaaaatgtcgatgaaatttggtatgtcatgaagctccattgttttgagg 28144452  T
Q  352 gaaccaagtttgacatcttggccaaatatgtaattca 388  Q
    |||||||| | |||||||| |||||||||||| ||||    
T  28144451 gaaccaagctggacatctttgccaaatatgtatttca 28144415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 143 - 388
Target Start/End: Complemental strand, 27910565 - 27910320
Alignment:
Q  143 tcaattttttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagt 242  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  27910565 tcaatttgttgtgcccatattttttaccacaacaatatatgtcagtccatgaaaacatattgcatttgattggctttgattgttcttctggcttggaagt 27910466  T
Q  243 atctccagaaatggaagatgacctcttaatgggtgaagtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || || |   ||||||||||| ||||  |||||||| |||  ||||| |||     
T  27910465 atctccagaaatggaagatgacctcttaatgggtgaagtcatggcaccataacatatagggaaaatgtcaatcatttttggtaaaccactaagctccata 27910366  T
Q  343 tcttttagagaaccaagtttgacatcttggccaaatatgtaattca 388  Q
    | | | || ||||||||||||||||||| |||||||||||| ||||    
T  27910365 tttatgagggaaccaagtttgacatctttgccaaatatgtatttca 27910320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 85 - 388
Target Start/End: Complemental strand, 27999421 - 27999115
Alignment:
Q  85 attaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaacaatata 181  Q
    |||| ||| |||||| | ||||||| |||||||||||| | ||||||| |||| ||||||   ||||| ||||| |||||||||||||||||||||||||    
T  27999421 attacgttctcttgttgttgatcctcagaaaccaatggaactttagtatttgtggtactcctcaatttgttgtggccatattttttaccacaacaatata 27999322  T
Q  182 tatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaagt 281  Q
    ||||  |||||||||| ||||||||||||||||| |||||||||  || ||| ||||||| |||||||||||||||||||| | |||||||||   |||     
T  27999321 tatctgtccatgaaaatatattgcatttgattggctctgattgtgtttgtgggttggaagcatctccagaaatggaagatgtcttcttaatggacaaaga 27999222  T
Q  282 catggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaatatg 381  Q
    ||| |||||||||| ||||||||| ||||| |||| |||||||||  ||||||| |  |||||| | || ||||||||||||||||||| ||||||||||    
T  27999221 cattgtacgattacattctgggaatatgtcaatcatatttggtaaatcatcaagatcaatttctctgagggaaccaagtttgacatctttgccaaatatg 27999122  T
Q  382 taattca 388  Q
    || ||||    
T  27999121 tatttca 27999115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 150 - 388
Target Start/End: Original strand, 19049988 - 19050226
Alignment:
Q  150 tttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctcca 249  Q
    ||||||||||| ||||||||| |||||||||| || | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||    
T  19049988 tttgtgcccattttttttaccccaacaatatacattagtccatgaaaagatattgcatttgatagggtctgattgttcttgtggcttggaagcatatcca 19050087  T
Q  250 gaaatggaagatgacctcttaatgggtgaagtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttctttta 349  Q
    || ||||||||||    ||||||||   ||| |||||||||||||| ||| |||||||||||||||||||| |||| ||||| |||||| | || ||| |    
T  19050088 gatatggaagatgcttccttaatggcgaaagacatggtacgattacattcagggaaaatgtcgatcaaattcggtatgccatgaagcttgaattgtttga 19050187  T
Q  350 gagaaccaagtttgacatcttggccaaatatgtaattca 388  Q
    | ||||||||||||| ||||||| |||||||||| ||||    
T  19050188 gggaaccaagtttgagatcttggtcaaatatgtatttca 19050226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 103 - 388
Target Start/End: Complemental strand, 28178840 - 28178564
Alignment:
Q  103 tgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaacaatatatatcattccatgaaaaga 199  Q
    ||||||| |||||||||||||||||| ||| |||| ||||||   ||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |    
T  28178840 tgatcctgagaaaccaatgggattttcgtaattgtggtactcctcaatttgttgtgcccatattttttaccacaacaatagatatcagtccatgaaaaca 28178741  T
Q  200 tattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaagtcatggtacgattactttc 299  Q
    |||||||||||||||| ||||||||||||| || ||            ||||||||||||||| | |||||||||   ||| ||| ||| |||||| |||    
T  28178740 tattgcatttgattggctctgattgttcttgtgact------------cagaaatggaagatggcttcttaatggacaaagacattgtaggattacattc 28178653  T
Q  300 tgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaatatgtaattca 388  Q
    ||||||||||||||||||||| || | ||||||||||| || || ||| || |||||||||||||||||||| ||||||||||| ||||    
T  28178652 tgggaaaatgtcgatcaaattcggaatgccatcaagctccaattttttgagcgaaccaagtttgacatcttgaccaaatatgtatttca 28178564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 150 - 388
Target Start/End: Original strand, 17748668 - 17748906
Alignment:
Q  150 tttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctcca 249  Q
    ||||||||||| ||||||||| |||||||||| || | ||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| || ||||    
T  17748668 tttgtgcccattttttttaccccaacaatatacattagtccatgaaaagatattgcatttgatagggtctgatttttcttgtggctgggaagcatatcca 17748767  T
Q  250 gaaatggaagatgacctcttaatgggtgaagtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttctttta 349  Q
    || ||||||||||    ||||||||   ||| |||||||||||||| ||| |||||||||||||||||||| |||| ||||| |||||| | || ||| |    
T  17748768 gatatggaagatgcttccttaatggcgaaagacatggtacgattacattcagggaaaatgtcgatcaaattcggtatgccatgaagcttgaattgtttga 17748867  T
Q  350 gagaaccaagtttgacatcttggccaaatatgtaattca 388  Q
    | ||||||||||||| ||||||| |||||||||| ||||    
T  17748868 gggaaccaagtttgagatcttggtcaaatatgtatttca 17748906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 383
Target Start/End: Original strand, 27463626 - 27463929
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 179  Q
    |||||||||||||||| ||  | ||||||| |||||| |||||||| ||||||||||| ||||||     ||||| |||| |||||||||||||||||||    
T  27463626 ttaccattaagttgtcctgccgttgatcctgagaaacgaatgggatgttagtacttgtggtactcctcaatttgttcccaaattttttaccacaacaata 27463725  T
Q  180 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaa 279  Q
    ||||||| ||  ||||||||| |||||||| |||||| |||||| | ||| ||||||||| | |||||||||| |  ||||||  | ||||||||  | |    
T  27463726 tatatcagtctgtgaaaagatgttgcatttcattgggcctgattctgcttgtggcttggaggcatctccagaagtataagatggtcccttaatggacgta 27463825  T
Q  280 gtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaata 379  Q
    | ||||||| | |||| |||||||||||| || ||||||||||||| ||||||||||||||||  ||  || |||||||||  ||||| || ||||||||    
T  27463826 gacatggtatggttacattctgggaaaatatcaatcaaatttggtatgccatcaagcttcattgtttcaagggaaccaagtgggacatttttgccaaata 27463925  T
Q  380 tgta 383  Q
    ||||    
T  27463926 tgta 27463929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 27968094 - 27967900
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 179  Q
    |||||||||||||||| || || ||||||| ||||||||||||||||| ||||||||| ||||||    |||||||||||||||||| ||||||||| ||    
T  27968094 ttaccattaagttgtcatgcggttgatcctcagaaaccaatgggatttcagtacttgtggtactcctcattttgtgcccatatttttcaccacaacagta 27967995  T
Q  180 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgg 274  Q
    ||||| | |||||||||| ||||||||||||||||| |||||||| |||| |||||  |||| || |||| |||||||||||| || ||||||||    
T  27967994 tatataagtccatgaaaacatattgcatttgattggctctgattgctcttgtggctctgaagcatatccaaaaatggaagatggccccttaatgg 27967900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 80 - 388
Target Start/End: Complemental strand, 28080240 - 28079941
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaaca 176  Q
    ||||||||  |||||| || || ||||||| ||||| |||||||||||||||  |||||||||||   |||||  |||| |||||||||||||||||| |    
T  28080240 ttaccattttgttgtcctgcggttgatcctcagaaaacaatgggattttagtctttgtagtactcctcaatttgctgtgtccatattttttaccacaaaa 28080141  T
Q  177 atatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggt 276  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||            | | ||||||||| ||| | |||| | ||      
T  28080140 atatatatcagtccatgaaaacatattgcatttgattgggtctgattgttcttgtgg------------ttcggaaatggaaaatggcttcttgagggac 28080053  T
Q  277 gaagtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaa 376  Q
    |||| ||| |||||||||| |||||||||||||||||| ||||| |||| |||| |||||| ||||| ||| |  ||||||||   ||||||||||||||    
T  28080052 gaagacattgtacgattacattctgggaaaatgtcgatgaaattcggtatgccaccaagctccatttttttgacggaaccaagcaggacatcttggccaa 28079953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 157 - 383
Target Start/End: Complemental strand, 28130700 - 28130492
Alignment:
Q  157 ccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatgg 256  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||  | |||||| ||||||||||||||||                   
T  28130700 ccatattttttaccacaacaatatatatcagtccatgaaaacatattgcatttgattgactttgattgatcttctggcttggaag--------------- 28130616  T
Q  257 aagatgacctcttaatgggtgaagtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaacc 356  Q
       ||| | |||||||||| |||| ||||||||| |||| |||||||||||| | ||||||||| |||| |||||||||| |||||| ||| || |||||    
T  28130615 ---atgtcttcttaatgggcgaagccatggtacggttacattctgggaaaatatggatcaaattcggtatgccatcaagcatcatttttttgagggaacc 28130519  T
Q  357 aagtttgacatcttggccaaatatgta 383  Q
    |||||||||||||| ||||||||||||    
T  28130518 aagtttgacatctttgccaaatatgta 28130492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 80 - 388
Target Start/End: Original strand, 28471596 - 28471892
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 179  Q
    |||||||||||||||| ||| | |||||||  |||||||||| ||||| |||||||||  |||||  |  |||||||||||| ||||||||||| |||||    
T  28471596 ttaccattaagttgtcctgttgttgatcctgggaaaccaatgagatttcagtacttgtgttactccttaatttgtgcccatactttttaccacagcaata 28471695  T
Q  180 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaa 279  Q
    || || | |||||||||||||||||| |||||||||  ||||||||  || |||||| |||| || ||||||||||||||||||||||| |     || |    
T  28471696 tacattagtccatgaaaagatattgcgtttgattggacctgattgtgtttgtggcttagaagcatatccagaaatggaagatgacctctca-----tgta 28471790  T
Q  280 gtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaata 379  Q
            || || || ||| ||||||||||| |||| ||||||||| |||||||||||||| | | | || |||||||||||||||| || ||||||||    
T  28471791 -------caccataacattcagggaaaatgtcaatcatatttggtaaaccatcaagcttcatatttatgagggaaccaagtttgacatatttgccaaata 28471883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 80 - 388
Target Start/End: Original strand, 28491637 - 28491933
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 179  Q
    |||||||||||||||| ||| | |||||||  |||||||||| ||||| |||||||||  |||||  |  |||||||||||| ||||||||||| |||||    
T  28491637 ttaccattaagttgtcctgttgttgatcctgggaaaccaatgagatttcagtacttgtgttactccttaatttgtgcccatactttttaccacagcaata 28491736  T
Q  180 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaa 279  Q
    || || | |||||||||||||||||| |||||||||  ||||||||  || |||||| |||| || ||||||||||||||||||||||| |     || |    
T  28491737 tacattagtccatgaaaagatattgcgtttgattggacctgattgtgtttgtggcttagaagcatatccagaaatggaagatgacctctca-----tgta 28491831  T
Q  280 gtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaata 379  Q
            || || || ||| ||||||||||| |||| ||||||||| |||||||||||||| | | | || |||||||||||||||| || ||||||||    
T  28491832 -------caccataacattcagggaaaatgtcaatcatatttggtaaaccatcaagcttcatatttatgagggaaccaagtttgacatatttgccaaata 28491924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 268
Target Start/End: Original strand, 28512642 - 28512830
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 179  Q
    |||||||||||||||| ||| | |||||||  |||||||||| ||||| |||||||||  |||||  |  |||||||||||| ||||||||||| |||||    
T  28512642 ttaccattaagttgtcctgttgttgatcctgggaaaccaatgagatttcagtacttgtgttactccttaatttgtgcccatactttttaccacagcaata 28512741  T
Q  180 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctct 268  Q
    || || | |||||||||||||||||| |||||||||  | ||||||  || |||||| |||| || |||||||||||||||||||||||    
T  28512742 tacattagtccatgaaaagatattgcgtttgattggacccgattgtgtttgtggcttagaagcatatccagaaatggaagatgacctct 28512830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 11409548 - 11409457
Alignment:
Q  150 tttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaag 241  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  11409548 tttgtgcccattttttttaccacaacaatatatatcaatccatgaaaagatattgcatttgattgggtctgattgtgcttgtggcttggaag 11409457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 388
Target Start/End: Complemental strand, 27963379 - 27963273
Alignment:
Q  282 catggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaatatg 381  Q
    |||| ||||||||| || ||||||||||||||| ||||| ||||||||| |||||| || || ||| || ||||||||||  |||| || ||||||||||    
T  27963379 catgctacgattacattttgggaaaatgtcgattaaattcggtaagccaccaagctccaattgtttgagggaaccaagttcaacatttttgccaaatatg 27963280  T
Q  382 taattca 388  Q
    || ||||    
T  27963279 tatttca 27963273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 11409437 - 11409328
Alignment:
Q  279 agtcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggccaaat 378  Q
    |||||||||||||||||  |||||||||||||| || ||||||||||  | |||||||| || || ||| || ||||||||||  |||| || | |||||    
T  11409437 agtcatggtacgattacactctgggaaaatgtcaatgaaatttggtatcctatcaagctccaattgtttgagggaaccaagttcaacatttttgtcaaat 11409338  T
Q  379 atgtaattca 388  Q
    ||||| ||||    
T  11409337 atgtatttca 11409328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 28512847 - 28512891
Alignment:
Q  297 ttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcat 341  Q
    ||| ||||||||||| |||| ||||||||| ||||||||||||||    
T  28512847 ttcagggaaaatgtcaatcatatttggtaaaccatcaagcttcat 28512891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 80 - 388
Target Start/End: Original strand, 9329344 - 9329658
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaaca 176  Q
    ||||||||| |||||| || || ||||||| ||||||||||| | || ||| | || | ||||||   ||||| ||||||| |||| |||||||||||||    
T  9329344 ttaccattatgttgtcctgcggttgatcctcagaaaccaatgaggttgtagcatttttggtactcctcaatttgttgtgcctatatattttaccacaaca 9329443  T
Q  177 atatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggt 276  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||| || |||||| ||||||||||  | |||| |||      
T  9329444 atatatatcagtccatgaaaatatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatgctcccttactggag 9329543  T
Q  277 gaag---tcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggc 373  Q
     |||    ||||| | |||||| || |||||||||||||||||||||||||| |||||||| || || |  ||  ||||||||||||||||||||||  |    
T  9329544 aaagatcacatggcatgattacattatgggaaaatgtcgatcaaatttggtatgccatcaaactccaatgattcgagagaaccaagtttgacatcttcac 9329643  T
Q  374 caaatatgtaattca 388  Q
    |||||||||||||||    
T  9329644 caaatatgtaattca 9329658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 80 - 388
Target Start/End: Original strand, 9383127 - 9383441
Alignment:
Q  80 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaaca 176  Q
    ||||||||| |||||| || || ||||||| ||||||||||| | || ||| | || | ||||||   ||||| ||||||| |||| |||||||||||||    
T  9383127 ttaccattatgttgtcctgcggttgatcctcagaaaccaatgaggttgtagcatttttggtactcctcaatttgttgtgcctatatattttaccacaaca 9383226  T
Q  177 atatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggt 276  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||| || |||||| ||||||||||  | |||| |||      
T  9383227 atatatatcagtccatgaaaatatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatgctcccttactggag 9383326  T
Q  277 gaag---tcatggtacgattactttctgggaaaatgtcgatcaaatttggtaagccatcaagcttcatttcttttagagaaccaagtttgacatcttggc 373  Q
     |||    ||||| | |||||| || |||||||||||||||||||||||||| |||||||| || || |  ||  ||||||||||||||||||||||  |    
T  9383327 aaagatcacatggcatgattacattatgggaaaatgtcgatcaaatttggtatgccatcaaactccaatgattcgagagaaccaagtttgacatcttcac 9383426  T
Q  374 caaatatgtaattca 388  Q
    |||||||||||||||    
T  9383427 caaatatgtaattca 9383441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 8693983 - 8694188
Alignment:
Q  111 agaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttg 210  Q
    |||||||||||||||||||||||||||  |||||     ||||||||||||||||||||| ||||  ||||||||| | ||||||||||||||| |||||    
T  8693983 agaaaccaatgggattttagtacttgtgttactcctcaatttgtgcccatattttttaccgcaactgtatatatcagttcatgaaaagatattgaatttg 8694082  T
Q  211 attgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaagtcatggtacgattactttctgggaaaatgt 310  Q
    ||||||||||||||||||| | |||  |||| ||||||||||||||||| || | ||||||| |   ||| ||| |||||||||| |||||| |||||||    
T  8694083 attgggtctgattgttcttgttgctcagaagcatctccagaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgt 8694182  T
Q  311 cgatca 316  Q
    ||||||    
T  8694183 cgatca 8694188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 3699 - 3742
Alignment:
Q  93 gtcttgtggatgatccttagaaaccaatgggattttagtacttg 136  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  3699 gtcttttggatgatcctcagaaaccaatgggattttagtacttg 3742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University