View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7585_low_5 (Length: 379)
Name: NF7585_low_5
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7585_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 38868611 - 38868250
Alignment:
| Q |
1 |
tatccattttactactaactgattattgagactcaaagaatgagggccagctcagaattctacgtttgattgatgggaattgaatgacaattactcagat |
100 |
Q |
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| T |
38868611 |
tatccattttactactaactgattattgagactcaaagaatgagggccagctcagaattctacgtttgattgatgggaattgaatgacaattactc-gat |
38868513 |
T |
|
| Q |
101 |
tggaaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagtttcgaggaagatgttcacaaattagaa |
200 |
Q |
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| T |
38868512 |
tggaaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagtttcgaggaagatgttcacaaattagaa |
38868413 |
T |
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| Q |
201 |
cagttatatgcttttaccataatcaaaagtactttggaagactgtaggaatgtctttgagaggaaagtctatataagactagaagataactttgacatat |
300 |
Q |
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| T |
38868412 |
cagttatatgcttttaccataatcaaaagtactttggaagactataggaatgtctttgagaggaaagtctatataagactagaagataactttgacatat |
38868313 |
T |
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| Q |
301 |
tgaaggattcaaagccactagatttgaggccaggttaatttctgtggtgcagctgaatcattt |
363 |
Q |
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| T |
38868312 |
tgaaggattcaaagccactagatttgagaccaggttaatttctgtggtgcagctgaatcattt |
38868250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 38806751 - 38806821
Alignment:
| Q |
104 |
aaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagttt |
175 |
Q |
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| T |
38806751 |
aaagctaaacaaattgaggtttctggatttgtctcggtgtacaatcgaagaggact-taccatgatcagttt |
38806821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 38849502 - 38849438
Alignment:
| Q |
104 |
aaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatga |
168 |
Q |
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|||||||||||||| |||||| |||||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
38849502 |
aaagctaaacaaattcaggttgttggatttgtcttagtgtatagttgaagaggacaataccatga |
38849438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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