View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7585_low_9 (Length: 326)

Name: NF7585_low_9
Description: NF7585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7585_low_9
NF7585_low_9
[»] chr7 (19 HSPs)
chr7 (30-84)||(47639528-47639582)
chr7 (34-81)||(10980692-10980739)
chr7 (30-85)||(31211903-31211958)
chr7 (30-85)||(41750469-41750524)
chr7 (30-85)||(41750675-41750730)
chr7 (263-312)||(19494405-19494454)
chr7 (263-312)||(25428545-25428594)
chr7 (263-312)||(26703506-26703555)
chr7 (37-85)||(24685790-24685838)
chr7 (30-82)||(29997395-29997447)
chr7 (30-81)||(10701681-10701732)
chr7 (39-81)||(24613227-24613269)
chr7 (273-307)||(26459068-26459102)
chr7 (30-84)||(28749953-28750007)
chr7 (263-297)||(46068003-46068037)
chr7 (263-312)||(13919845-13919894)
chr7 (263-312)||(17354593-17354642)
chr7 (263-312)||(45909521-45909570)
chr7 (263-307)||(22786216-22786260)
[»] chr4 (19 HSPs)
chr4 (30-80)||(32004453-32004503)
chr4 (30-81)||(52708519-52708570)
chr4 (263-313)||(2088730-2088780)
chr4 (30-84)||(46737283-46737337)
chr4 (30-82)||(38179873-38179925)
chr4 (30-81)||(779775-779827)
chr4 (30-82)||(53920218-53920270)
chr4 (30-84)||(53599367-53599421)
chr4 (263-312)||(13070005-13070054)
chr4 (30-142)||(16467873-16467997)
chr4 (263-307)||(16178648-16178692)
chr4 (263-311)||(30866999-30867047)
chr4 (30-85)||(10519584-10519639)
chr4 (30-81)||(55292308-55292359)
chr4 (30-84)||(15030694-15030748)
chr4 (30-84)||(49767598-49767652)
chr4 (30-79)||(35803529-35803578)
chr4 (263-304)||(44832528-44832569)
chr4 (86-142)||(49767527-49767584)
[»] chr6 (10 HSPs)
chr6 (30-85)||(31238357-31238412)
chr6 (30-85)||(31247727-31247782)
chr6 (30-84)||(2660349-2660403)
chr6 (33-79)||(17848234-17848280)
chr6 (30-81)||(9062878-9062929)
chr6 (30-81)||(27133957-27134008)
chr6 (263-312)||(19090281-19090330)
chr6 (34-84)||(8307943-8307991)
chr6 (30-84)||(23898782-23898836)
chr6 (263-312)||(35128789-35128838)
[»] chr8 (7 HSPs)
chr8 (30-79)||(11517592-11517641)
chr8 (30-85)||(32668128-32668183)
chr8 (34-85)||(26040146-26040197)
chr8 (30-81)||(31592713-31592764)
chr8 (34-79)||(3490219-3490264)
chr8 (267-312)||(33417751-33417796)
chr8 (30-82)||(7671728-7671780)
[»] chr3 (18 HSPs)
chr3 (30-85)||(8557615-8557670)
chr3 (263-312)||(37600196-37600245)
chr3 (30-81)||(34809183-34809234)
chr3 (30-80)||(31311503-31311553)
chr3 (30-84)||(45745543-45745597)
chr3 (263-312)||(10769791-10769840)
chr3 (263-312)||(24748976-24749025)
chr3 (263-312)||(46237112-46237161)
chr3 (30-67)||(48861248-48861285)
chr3 (30-81)||(11083254-11083304)
chr3 (37-80)||(26502810-26502853)
chr3 (30-79)||(52201341-52201387)
chr3 (30-85)||(37509251-37509308)
chr3 (267-308)||(742025-742066)
chr3 (34-79)||(20521594-20521639)
chr3 (263-296)||(21232604-21232637)
chr3 (33-85)||(39908848-39908900)
chr3 (263-307)||(43657067-43657111)
[»] chr1 (19 HSPs)
chr1 (30-81)||(15932673-15932724)
chr1 (33-84)||(24084181-24084232)
chr1 (30-81)||(44107732-44107783)
chr1 (30-79)||(1656785-1656834)
chr1 (45-109)||(33776684-33776746)
chr1 (30-85)||(5117177-5117232)
chr1 (30-85)||(21182992-21183047)
chr1 (30-80)||(1267112-1267162)
chr1 (30-84)||(14321047-14321101)
chr1 (263-312)||(11135804-11135853)
chr1 (263-312)||(11430506-11430555)
chr1 (263-312)||(14094067-14094116)
chr1 (263-312)||(41918060-41918109)
chr1 (264-312)||(32848649-32848697)
chr1 (30-85)||(48982862-48982917)
chr1 (33-81)||(25113843-25113892)
chr1 (267-312)||(28109937-28109981)
chr1 (263-311)||(15523275-15523323)
chr1 (263-311)||(15531269-15531317)
[»] chr2 (13 HSPs)
chr2 (30-84)||(33500100-33500154)
chr2 (30-85)||(8257253-8257308)
chr2 (30-81)||(37807277-37807328)
chr2 (263-312)||(28898103-28898152)
chr2 (263-312)||(42182954-42183003)
chr2 (33-81)||(32810036-32810084)
chr2 (263-305)||(19190697-19190739)
chr2 (263-312)||(4964739-4964788)
chr2 (263-312)||(6315723-6315772)
chr2 (263-312)||(15508979-15509028)
chr2 (263-312)||(31395511-31395560)
chr2 (263-303)||(1110263-1110303)
chr2 (266-306)||(37719909-37719949)
[»] chr5 (6 HSPs)
chr5 (39-84)||(39075035-39075080)
chr5 (263-312)||(42224657-42224706)
chr5 (34-81)||(3247712-3247759)
chr5 (30-81)||(4828901-4828952)
chr5 (30-81)||(40197643-40197694)
chr5 (32-81)||(26362481-26362530)
[»] scaffold0024 (1 HSPs)
scaffold0024 (42-81)||(36281-36320)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 47639582 - 47639528
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  47639582 attaaaaacaacaactttttgacttttataaagttaaacatttcatttttcatca 47639528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 10980739 - 10980692
Alignment:
Q  34 aaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10980739 aaaacaacaactttttaacttttataaagttaaacattctacttttca 10980692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 31211903 - 31211958
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  31211903 attaaagacaacaactttttgacttttatgaagtggaacattccacttttcatcat 31211958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 41750469 - 41750524
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||||||||||||||||||||||||||| |||  |||| |||||||||||||||    
T  41750469 attaaaaacaacaactttttgacttttatacagtggaacactccacttttcatcat 41750524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 41750675 - 41750730
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||| || |||||||||||| |||||| |||||||||||||||||||||    
T  41750675 attaaagacaataattttttgacttttctaaagtgaaacattccacttttcatcat 41750730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 19494454 - 19494405
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||  ||||||||||||||    
T  19494454 atgtatgtcccaccactttatgtgggttccattttcaaagtgtagatcct 19494405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 25428594 - 25428545
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| || |||||| ||||||||||||||    
T  25428594 atgtatgtcccaccactttatgtgggttacatttccaaagtgtagatcct 25428545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 26703555 - 26703506
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||| ||||    
T  26703555 atgtatgtctcaccactttatgtgggttccatttctaaagtgtaggtcct 26703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 24685838 - 24685790
Alignment:
Q  37 acaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||||||||||||||||| ||||||  || |||||||||||||||||    
T  24685838 acaacaactttttgacttttctaaagtggaatattccacttttcatcat 24685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 29997447 - 29997395
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcat 82  Q
    |||||| ||||||||||||| |||||| ||||||  |||||||||||||||||    
T  29997447 attaaagacaacaactttttaacttttttaaagtggaacattccacttttcat 29997395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 10701732 - 10701681
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||| | | ||||||||||||||||| |||||||||| ||||||||    
T  10701732 attaaaaacatcgattttttgacttttataaacttaaacattcaacttttca 10701681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 24613269 - 24613227
Alignment:
Q  39 aacaactttttgacttttataaagttaaacattccacttttca 81  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||    
T  24613269 aacaactttttgactttcataaagttgaacattctacttttca 24613227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 26459068 - 26459102
Alignment:
Q  273 caccactttatgtggattccatttctaaagtgtag 307  Q
    ||||||||||||||| |||||||||||||||||||    
T  26459068 caccactttatgtgggttccatttctaaagtgtag 26459102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 28750007 - 28749953
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    |||||||| | || |||||| ||||| |||||||||||||||| |||||||||||    
T  28750007 attaaaaatatcatcttttttactttcataaagttaaacattctacttttcatca 28749953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 46068003 - 46068037
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttc 297  Q
    ||||||||||||||||||||||||| |||||||||    
T  46068003 atgtatgttccaccactttatgtgggttccatttc 46068037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 13919845 - 13919894
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||  ||||||||| ||||    
T  13919845 atgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcct 13919894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 17354642 - 17354593
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||| ||||| ||||||||| ||||    
T  17354642 atgtatgtcccaccactttatgtgggttctatttccaaagtgtaggtcct 17354593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 45909521 - 45909570
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||| ||||| ||||    
T  45909521 atgtatgtcccaccactttatgtgggttccatttccaaattgtaggtcct 45909570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 22786216 - 22786260
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtag 307  Q
    ||||||||  ||||||||||||||| ||||||||| |||||||||    
T  22786216 atgtatgtctcaccactttatgtgggttccatttccaaagtgtag 22786260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 32004503 - 32004453
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttc 80  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32004503 attaaaaacaacaactttttgactttcataaagttaaacattccacttttc 32004453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 52708519 - 52708570
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  52708519 attaaaaacaacaactttttgactttcataaagttaaacattcaacttttca 52708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 2088780 - 2088730
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcctg 313  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  2088780 atgtatgtcccaccactttatgtggattccatttccaaagtgtagatcctg 2088730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 46737337 - 46737283
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  46737337 attaaaaacaataactttttgattttcataaagttaaacattccacttttcatca 46737283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 38179925 - 38179873
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcat 82  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  38179925 attaaaaacatcaactttttgactttcataaagttaaacattcaacttttcat 38179873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 779827 - 779775
Alignment:
Q  30 attaaaaacaacaacttttt-gacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  779827 attaaaaacaacaacttttttgactttcataaagttaaacattcaacttttca 779775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 53920218 - 53920270
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcat 82  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||| ||||    
T  53920218 attaaagacaacaactttttgacttttctaaagtgaaacattccacttctcat 53920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 53599421 - 53599367
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||| |||||||| ||||| ||||||||||||||| || |||||||||    
T  53599421 attaaaaacaataacttttttactttcataaagttaaacattacatttttcatca 53599367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 13070005 - 13070054
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||| ||||    
T  13070005 atgtatgttccaccactttatgtgggttccattttcaaagtgtaggtcct 13070054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 16467873 - 16467997
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttt--tca---------tcataatttttatattaatcttcttaaccatt-actt 117  Q
    ||||||||||| |||||||| ||||| |||||||||||||||| |||||  |||          |||||||| |||||||||||||||||| |||  |||    
T  16467873 attaaaaacaataacttttttactttcataaagttaaacattcaactttcatcaatttccaatgcataatttctatattaatcttcttaactattgtctt 16467972  T
Q  118 tagggtactagttagcatttccctt 142  Q
    ||| ||| |||||||||||||||||    
T  16467973 tagagtattagttagcatttccctt 16467997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16178648 - 16178692
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtag 307  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||    
T  16178648 atgtatgtcccaccactttatgtgggttccatttccaaagtgtag 16178692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 30867047 - 30866999
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcc 311  Q
    |||||||| |||||||||||||||| ||||||||  |||||||||||||    
T  30867047 atgtatgtcccaccactttatgtgggttccattttcaaagtgtagatcc 30866999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 10519639 - 10519584
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||||| |||||    
T  10519639 attaaagacaataactttttgacttttctaaagtggaacattccacttttaatcat 10519584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 55292308 - 55292359
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||||||||| ||| ||||| ||||||||| || ||||||    
T  55292308 attaaaaacaacaactttttgattttcataaaattaaacatttcagttttca 55292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 15030748 - 15030694
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||||||||| |||||||| |||||||  |||| ||||||||| ||||    
T  15030748 attaaaaacaacaacttattgactttcataaagtagaacaatccacttttaatca 15030694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 49767652 - 49767598
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    |||||||| || || ||||  ||||||||||||||||||||| ||||||||||||    
T  49767652 attaaaaataataatttttaaacttttataaagttaaacatttcacttttcatca 49767598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 35803529 - 35803578
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    |||||||||||||| ||||| || |||||||||||||| ||| |||||||    
T  35803529 attaaaaacaacaattttttaacgtttataaagttaaatatttcactttt 35803578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 44832528 - 44832569
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtg 304  Q
    |||||||| |||||| ||||||||||||||||||| ||||||    
T  44832528 atgtatgtcccaccattttatgtggattccatttccaaagtg 44832569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 49767584 - 49767527
Alignment:
Q  86 aatttttatattaatcttcttaaccatta-ctttagggtactagttagcatttccctt 142  Q
    |||||||||||| ||||| |||||||||| |||||| | |||||||| ||||||||||    
T  49767584 aatttttatatttatctttttaaccattacctttagagcactagttaacatttccctt 49767527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 31238412 - 31238357
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  31238412 attaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcat 31238357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 31247782 - 31247727
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  31247782 attaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcat 31247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 2660403 - 2660349
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||    
T  2660403 attaaaaacaacaactttttaacttttataaagtgaaacgttctacttttcatca 2660349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 17848234 - 17848280
Alignment:
Q  33 aaaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  17848234 aaaaacaacaactatttgatttttataaagttaaacattccactttt 17848280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 9062878 - 9062929
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    ||||||||||||||||||||  |||| |||||||||||||||| ||||||||    
T  9062878 attaaaaacaacaactttttatctttcataaagttaaacattcaacttttca 9062929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 27134008 - 27133957
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||| ||||| ||||| ||| |||||||||||||||||||||    
T  27134008 attaaaaacaacaatttttttactttcatatagttaaacattccacttttca 27133957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 19090330 - 19090281
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  19090330 atgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcct 19090281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 8307991 - 8307943
Alignment:
Q  34 aaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||||||  |||||||||||| | ||||||||||||||||||||    
T  8307991 aaaacaacaacttt--gacttttataaaatcaaacattccacttttcatca 8307943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 23898782 - 23898836
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||| |  ||||| ||||| |||||||||||||||||||||| |||||    
T  23898782 attaaaaacaaaactttttttactttcataaagttaaacattccactttccatca 23898836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 35128838 - 35128789
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||  ||||||||| ||||    
T  35128838 atgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcct 35128789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 11517592 - 11517641
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  11517592 attaaaaacaacaactttttgactttcataaagttaaacattctactttt 11517641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 32668128 - 32668183
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||    
T  32668128 attaaaaacaacaaatttttgacttttataaaatgaaacattccacttttaatcat 32668183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 26040197 - 26040146
Alignment:
Q  34 aaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    ||||||||||||||| |||||| ||||| | |||| ||||||||||||||||    
T  26040197 aaaacaacaacttttcgactttcataaaatgaaactttccacttttcatcat 26040146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 31592764 - 31592713
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||| ||||||||||| ||||||||||| |||||||||| | ||||||    
T  31592764 attaaaaataacaactttttaacttttataaaattaaacattcaatttttca 31592713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 3490219 - 3490264
Alignment:
Q  34 aaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||||    
T  3490219 aaaacaacaaacttttgacttttaaaaagttaaacataccactttt 3490264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 33417751 - 33417796
Alignment:
Q  267 atgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    ||||||||||||||||||||| || |||||| ||||||||| ||||    
T  33417751 atgttccaccactttatgtgggtttcatttccaaagtgtaggtcct 33417796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 7671780 - 7671728
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcat 82  Q
    ||||||||||||||||||||||||||| |||| |  ||||||  |||||||||    
T  7671780 attaaaaacaacaactttttgacttttttaaaatggaacattttacttttcat 7671728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 8557670 - 8557615
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  8557670 attaaagacaacaacttattgacttttctaaagtgaaacattccacttttcatcat 8557615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 37600245 - 37600196
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  37600245 atgtatgtcccaccactttatgtgggttccatttctaaagtgtaggtcct 37600196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 34809234 - 34809183
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    ||||||| |||||| ||||||||||| |||||||||||||||| ||||||||    
T  34809234 attaaaagcaacaattttttgactttcataaagttaaacattctacttttca 34809183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 31311553 - 31311503
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttc 80  Q
    |||||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  31311553 attaaaaacatcaactttttgactttcataaaattaaacattctacttttc 31311503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 45745597 - 45745543
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||| |||| ||||    
T  45745597 attaaaatcaacaattttttgactttcataaagttaaacattccattttttatca 45745543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 10769840 - 10769791
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  10769840 atgtatgtcccaccactttatatgggttccatttctaaagtgtaggtcct 10769791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 24749025 - 24748976
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||| ||||    
T  24749025 atgtatgtcccaccattttatgtgggttccatttctaaagtgtaggtcct 24748976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 46237161 - 46237112
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||| ||||    
T  46237161 atgtatgtcccaccactttatgtgggttccatttctaaaatgtaggtcct 46237112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 48861285 - 48861248
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaa 67  Q
    |||||||||||||| |||||||||||||||||||||||    
T  48861285 attaaaaacaacaattttttgacttttataaagttaaa 48861248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 11083304 - 11083254
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    ||||||||||| || ||||| |||||||||||||||||||||||| ||||||    
T  11083304 attaaaaacaataatttttt-acttttataaagttaaacattccatttttca 11083254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 26502853 - 26502810
Alignment:
Q  37 acaacaactttttgacttttataaagttaaacattccacttttc 80  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  26502853 acaacaactttttgacttttaaaaagttgaacattctacttttc 26502810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 52201387 - 52201341
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||    
T  52201387 attaaaaacaacaactttttgactt---taaagttaaacatttcactttt 52201341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 37509251 - 37509308
Alignment:
Q  30 attaaaaacaacaact--ttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||||||||  ||||||||||| |||| | |||||||||||||||||||||    
T  37509251 attaaagacaacaactctttttgacttttctaaaatgaaacattccacttttcatcat 37509308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 742025 - 742066
Alignment:
Q  267 atgttccaccactttatgtggattccatttctaaagtgtaga 308  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  742025 atgtcccaccactttgtgtggattctatttctaaagtgtaga 742066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 20521594 - 20521639
Alignment:
Q  34 aaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    ||||||||||  |||||||||||| |||||| ||||||||||||||    
T  20521594 aaaacaacaaagttttgacttttaaaaagttgaacattccactttt 20521639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 21232637 - 21232604
Alignment:
Q  263 atgtatgttccaccactttatgtggattccattt 296  Q
    ||||||||||||||||||||||||| ||||||||    
T  21232637 atgtatgttccaccactttatgtgggttccattt 21232604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 39908848 - 39908900
Alignment:
Q  33 aaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    ||||||||||||||||| |||||| ||||||  |  |||||||||||||||||    
T  39908848 aaaaacaacaactttttaacttttttaaagtagataattccacttttcatcat 39908900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 43657111 - 43657067
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtag 307  Q
    |||||||| |||||||||||||||  ||||||||| |||||||||    
T  43657111 atgtatgtcccaccactttatgtgagttccatttccaaagtgtag 43657067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 15932673 - 15932724
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  15932673 attaaaaacaacaattttttttcttttataaagttaaacattccacttttca 15932724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 24084232 - 24084181
Alignment:
Q  33 aaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  24084232 aaaaacaacaattttttgactttcataaagttaaacattccactttttatca 24084181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 44107783 - 44107732
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  44107783 attaaaaacaacaactttttgactttcataaaggtaaacattctacttttca 44107732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 1656785 - 1656834
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccactttt 79  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  1656785 attaaaaacaacaccttttttacttttataaatttaaacattccactttt 1656834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 33776746 - 33776684
Alignment:
Q  45 tttttgacttttataaagttaaacattccacttttcatcataatttttatattaatcttcttaac 109  Q
    ||||||||||| |||||||||||||||||||| |||| |  ||||| ||||||||||||||||||    
T  33776746 tttttgactttcataaagttaaacattccactattcacc--aatttctatattaatcttcttaac 33776684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 5117232 - 5117177
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||||||||||||| |||||  ||||| |||||||||||||||||||||    
T  5117232 attaaagacaacaactttttgtcttttcgaaagtgaaacattccacttttcatcat 5117177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 21182992 - 21183047
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||||||||||||||||||| ||||||  ||||||||| ||||||||||    
T  21182992 attaaagacaacaactttttgacttttctaaagtggaacattccatttttcatcat 21183047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 1267162 - 1267112
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttc 80  Q
    |||||| |||||||||||||||||||| ||||||  |||||||||||||||    
T  1267162 attaaagacaacaactttttgacttttctaaagtggaacattccacttttc 1267112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 14321047 - 14321101
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    |||||||||||||||||||| ||||| ||||| |||||||||  |||||||||||    
T  14321047 attaaaaacaacaacttttttactttcataaaattaaacattttacttttcatca 14321101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 11135804 - 11135853
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  11135804 atgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcct 11135853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 11430506 - 11430555
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  11430506 atgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcct 11430555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 14094116 - 14094067
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  14094116 atgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcct 14094067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 41918060 - 41918109
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||||||||||||  ||||||||| ||||    
T  41918060 atgtatgtcccaccactttatgtggattccattttcaaagtgtaggtcct 41918109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 32848697 - 32848649
Alignment:
Q  264 tgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    ||||||| |||||||||||||||||||||||||  ||||||||| ||||    
T  32848697 tgtatgtcccaccactttatgtggattccattttcaaagtgtaggtcct 32848649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 48982862 - 48982917
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    ||||||||||| |||||||| |||||||||||   |||||||| ||||||||||||    
T  48982862 attaaaaacaataacttttttacttttataaaacgaaacattcaacttttcatcat 48982917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 25113892 - 25113843
Alignment:
Q  33 aaaaacaacaacttttt-gacttttataaagttaaacattccacttttca 81  Q
    ||||||||||||||||| |||||| |||||||||||||||| | ||||||    
T  25113892 aaaaacaacaacttttttgactttcataaagttaaacattctatttttca 25113843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 28109937 - 28109981
Alignment:
Q  267 atgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  28109937 atgttccaccattttatgtgggttccatttc-aaagtgtagatcct 28109981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 15523275 - 15523323
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcc 311  Q
    |||||||| ||||||||||||| |  ||| |||||||||||||||||||    
T  15523275 atgtatgtcccaccactttatgcgagttctatttctaaagtgtagatcc 15523323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 15531269 - 15531317
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcc 311  Q
    |||||||| ||||||||||||| |  ||| |||||||||||||||||||    
T  15531269 atgtatgtcccaccactttatgcgagttctatttctaaagtgtagatcc 15531317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 33500100 - 33500154
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||| |||||||||| |||||||||| || ||||||||||||||||||||    
T  33500100 attaaaaacgacaactttttaacttttataaggtgaaacattccacttttcatca 33500154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 8257253 - 8257308
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttcatcat 85  Q
    |||||| |||||||||||||||||||| ||||||  ||||||||| ||||||||||    
T  8257253 attaaagacaacaactttttgacttttctaaagtggaacattccatttttcatcat 8257308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 37807328 - 37807277
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    ||||||||||||| |||||||||||| ||||||||||||||| || ||||||    
T  37807328 attaaaaacaacacctttttgactttcataaagttaaacatttcatttttca 37807277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 28898152 - 28898103
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| || |||||| ||||||||||||||    
T  28898152 atgtatgtcccaccactttatgtgggtttcatttccaaagtgtagatcct 28898103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 42182954 - 42183003
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  42182954 atgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcct 42183003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 32810084 - 32810036
Alignment:
Q  33 aaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||| ||||||||||||||||||| ||||||  ||||||||    
T  32810084 aaaaacaacaacattttgacttttataaagttgaacattttacttttca 32810036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 19190697 - 19190739
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgt 305  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  19190697 atgtatgttccaccactttaagtggaatccatttttaaagtgt 19190739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 4964788 - 4964739
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| ||||||||||||||||||| |||||  ||||||||| ||||    
T  4964788 atgtatgtcccaccactttatgtggatttcattttcaaagtgtaggtcct 4964739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 6315723 - 6315772
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    ||||||||||||||||||||| | | ||||||||| ||||||||| ||||    
T  6315723 atgtatgttccaccactttatataggttccatttccaaagtgtaggtcct 6315772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 15508979 - 15509028
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||| ||| ||||| ||||||||| ||||||||||||||    
T  15508979 atgtatgtcccaccattttttgtgggttccatttccaaagtgtagatcct 15509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 31395560 - 31395511
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| || ||||||||||||||||||||||| | ||||||| ||||    
T  31395560 atgtatgtccctccactttatgtggattccatttccatagtgtaggtcct 31395511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 1110263 - 1110303
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagt 303  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  1110263 atgtatgtcccaccactttatgtgggttccatttccaaagt 1110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 37719949 - 37719909
Alignment:
Q  266 tatgttccaccactttatgtggattccatttctaaagtgta 306  Q
    ||||| |||||| |||| |||||||||||||||||||||||    
T  37719949 tatgtcccaccattttaagtggattccatttctaaagtgta 37719909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 39075080 - 39075035
Alignment:
Q  39 aacaactttttgacttttataaagttaaacattccacttttcatca 84  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  39075080 aacaactttttgacttttataaagttaaacattccaccttttatca 39075035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 42224706 - 42224657
Alignment:
Q  263 atgtatgttccaccactttatgtggattccatttctaaagtgtagatcct 312  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  42224706 atgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcct 42224657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 3247712 - 3247759
Alignment:
Q  34 aaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||| ||||| || |||||||||||| |||||||||    
T  3247712 aaaacaacaacttttttactttcatgaagttaaacattacacttttca 3247759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 4828901 - 4828952
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    ||||||||||||||| |||| ||||| ||||||||||| |||| ||||||||    
T  4828901 attaaaaacaacaaccttttaactttcataaagttaaatattctacttttca 4828952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 40197643 - 40197694
Alignment:
Q  30 attaaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||| | ||||| | ||||||||| |||||||||||||||||||    
T  40197643 attaaaaacaacgatttttttatttttataaaattaaacattccacttttca 40197694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 26362530 - 26362481
Alignment:
Q  32 taaaaacaacaactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||||||||||||| |||||||| || |||  ||||||||    
T  26362530 taaaaacaacaactttttgactttcataaagttgaatattttacttttca 26362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 36320 - 36281
Alignment:
Q  42 aactttttgacttttataaagttaaacattccacttttca 81  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  36320 aactttttgactttcataaagttaaacattccatttttca 36281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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