View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7586_high_5 (Length: 239)
Name: NF7586_high_5
Description: NF7586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7586_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 17953848 - 17953640
Alignment:
| Q |
17 |
atggtgtcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttcttgtac |
116 |
Q |
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| T |
17953848 |
atggtgtcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttcttgtac |
17953749 |
T |
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| Q |
117 |
attgttcttttctatcaggaccaacaatcgttatgtgggaaattactttgatgtcaaataaatttttgtcatcattatgaagttttgtttattttaatcc |
216 |
Q |
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| T |
17953748 |
attgttcttttctatcaggaccaacaatcgttatgtgggaaattactttgatgtcaaataaatttttgtcatcattatgaagttttgtttattttaatcg |
17953649 |
T |
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| Q |
217 |
aaatgatgt |
225 |
Q |
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||||||||| |
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| T |
17953648 |
aaatgatgt |
17953640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 17721376 - 17721493
Alignment:
| Q |
23 |
tcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttcttgtacattgtt |
122 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| | ||||| || ||||||||||| |
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| T |
17721376 |
tcgtgaaatatttgcatatctttattcttttt-caaactagattagtcatttcagattaacattatgaatctcatc----------tcatgtacattgtt |
17721464 |
T |
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| Q |
123 |
cttttctatcaggaccaacaatcgttatg |
151 |
Q |
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| T |
17721465 |
cttttctatcagcaccaacaattgttatg |
17721493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 19022605 - 19022722
Alignment:
| Q |
23 |
tcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttcttgtacattgtt |
122 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| | ||||| || ||||||||||| |
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| T |
19022605 |
tcgtgaaatatttgcatatctttattcttttt-caaactagattagtcatttcagattaacattatgaatctcatc----------tcatgtacattgtt |
19022693 |
T |
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| Q |
123 |
cttttctatcaggaccaacaatcgttatg |
151 |
Q |
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|||||||||||| ||||||||| |||||| |
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| T |
19022694 |
cttttctatcagcaccaacaattgttatg |
19022722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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