View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7586_low_1 (Length: 811)
Name: NF7586_low_1
Description: NF7586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7586_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 14 - 811
Target Start/End: Original strand, 44964881 - 44965678
Alignment:
| Q |
14 |
ggacatcaatttgatcctttgcatgcggataacaacatagcatatgtgatacattcaatacattacaacacaacatatttttctttcatgttgcactatc |
113 |
Q |
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| T |
44964881 |
ggacatcaatttgatcctttgcatgcggataacaacatagcatatgtgatacattcaatacattacaacacaacatatttttctttcatgttgcactatc |
44964980 |
T |
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| Q |
114 |
ccatactccaaacaatgctacttttaatttagcttcattgttgccaaatccacatctatacagacatgggtcacaaagaaaaatcacgaaaagataagag |
213 |
Q |
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| T |
44964981 |
ccatactccaaacaatgctacttttaatttagcttcattgttgccaaatccacatctatacagacatgggtcacaaagaaaaatcacgaaaagataagag |
44965080 |
T |
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| Q |
214 |
attgcaagaaatatcccttttgagaaccattccttattctgatcaccagaggttaatttgaactataattattttattgttcaataatattaacttctag |
313 |
Q |
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| T |
44965081 |
attgcaagaaatatcccttttgagaaccattccttattctgatcaccagaggttaatttgaactataattattttattgttcaataatattaacttctag |
44965180 |
T |
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| Q |
314 |
ttagtttttccttctgattatcatatgaacatatgattgttaaattcgatgcattcacccaatcaacacgtcggtggtcgtcaaatcaagattgaataat |
413 |
Q |
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| T |
44965181 |
ttagtttttccttctgattatcatatgaacatatgattgttaaattcgatgcattcacccaatcaacacgtcggtggtcgtcagatcaagattgaataat |
44965280 |
T |
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| Q |
414 |
ccatatatatttcaatccagtccgcttgatctcgacccaatgaccaccaatgtacggattgtgtgaatgtgtggattgttgattgcaacaaattaaaatc |
513 |
Q |
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| T |
44965281 |
ccatatatatttcaatccagtccgcttgatttcgatccaatgaccaccaatgtacggattgtgtgaatgtgtggattgttgattgcaacaaattaaaatc |
44965380 |
T |
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| Q |
514 |
cattaaaatcatgattttaatatgttacttttctatataaaggtggtggtccaaggaaactattgccgtggttaccggtggaaaccgaggaattggtttt |
613 |
Q |
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| T |
44965381 |
cgttaaaatcatgattttaatatgttacttttctatataaaggtggtggtccaaggaaactattgccgtggttaccggtggaaaccgaggaattggtttt |
44965480 |
T |
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| Q |
614 |
gagatttcaagacaacttgcagatcatggagttactgttgtgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtg |
713 |
Q |
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| T |
44965481 |
gagatttcaagacaacttgcagatcatggagttactgttgtgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtg |
44965580 |
T |
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| Q |
714 |
gtttggacgtccattgtcatcaacttgatatattagattcttcatctgtcaatgaatttgctgaatggttgaaagaagaatatggtggtctagatatt |
811 |
Q |
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| T |
44965581 |
gtttggacgtccattgtcatcaacttgatatattagattcttcatccgtcaatgaatttgctgaatggttgaaagaagaatatggtggtctagatatt |
44965678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 547 - 759
Target Start/End: Original strand, 40068703 - 40068915
Alignment:
| Q |
547 |
tatataaaggtggtggtccaaggaaactattgccgtggttaccggtggaaaccgaggaattggttttgagatttcaagacaacttgcagatcatggagtt |
646 |
Q |
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| T |
40068703 |
tatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagaggaattgggtttgaaatttcaagacaacttgctgaacatggagta |
40068802 |
T |
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| Q |
647 |
actgttgtgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtggtttggacgtccattgtcatcaacttgatatat |
746 |
Q |
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| T |
40068803 |
actgtaatattaacaacaagagatgctggtgttggcgttgaatcaattaaggtcttgcaagaaggtggtctcgatgtggcatgtcatcaacttgatgtat |
40068902 |
T |
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| Q |
747 |
tagattcttcatc |
759 |
Q |
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| T |
40068903 |
tagattcttcatc |
40068915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 40068400 - 40068465
Alignment:
| Q |
202 |
aaaagataagagattgcaagaaatatcccttttgagaaccattccttattctgatcaccagaggtt |
267 |
Q |
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| T |
40068400 |
aaaagataagagatcgcaagaaatatcgcttttgaggaccattccttattctgatcaccaaaggtt |
40068465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 554 - 720
Target Start/End: Original strand, 10898328 - 10898494
Alignment:
| Q |
554 |
aggtggtggtccaaggaaactattgccgtggttaccggtggaaaccgaggaattggttttgagatttcaagacaacttgcagatcatggagttactgttg |
653 |
Q |
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| T |
10898328 |
aggtggtggtctaaagaaactattgctgtggttaccggtggaaacagaggaattgggtttgagatttgcaggcaacttgctgctcatggattgactgtta |
10898427 |
T |
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| Q |
654 |
tgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtggtttgga |
720 |
Q |
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| T |
10898428 |
tactaacatcaagagatgctagtgctggtgctgaatcaattaagattttgcaagaaggtggtttgga |
10898494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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