View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7586_low_2 (Length: 517)
Name: NF7586_low_2
Description: NF7586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7586_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 1432779 - 1433267
Alignment:
| Q |
12 |
agagataaagtacattgaaaataaaattcatggtcccaagaaatgttaagaacatcaccttctattgatgaaatgattctctaaatcatttgttatttaa |
111 |
Q |
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| T |
1432779 |
agagataaagtacattgaaaattaaattcatggtcccaagaaatgttaagaacatcaccttctattgatgaaatgattctctaaatcatttgttatttaa |
1432878 |
T |
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| Q |
112 |
ttcctatgattaacataatgtagcacactaactgattaacataaaacgatagacaatgttttaaaaactaaaccagacatctaactcatgaggccttcgt |
211 |
Q |
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| T |
1432879 |
ttccgatgattaacataatgtagcacactaactgattaacataaaacgatagacaatgttttaaaaactaaaccagacatctaactcatgaggccttcgt |
1432978 |
T |
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| Q |
212 |
gttatagttcaaatgctttaaaccgtctgaaatggagtaaaactgcaatcgataagacataatagcatatattcatttatttaaacggtaacttcttcca |
311 |
Q |
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| T |
1432979 |
gttatagttcaactgctttaaaccgtctgaaacggaataaaactgcaatcgataagacatattagcatatattcatttatttaaacggtaacttcttcca |
1433078 |
T |
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| Q |
312 |
cgaaaagcaattccatcaccctgattttgctgctgaggtgaagaagcattaatgccggttgtttcctgtgaagtgcttcttgttgttgtttgatttccac |
411 |
Q |
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| T |
1433079 |
cgaaaagcaattccatcaccctgattttgctgctgaggtgaagaagcattaatgccgcttgtttcctgtgaagtgcttcttgttgttgtttgatttccac |
1433178 |
T |
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| Q |
412 |
caagacggttgcttcttcctttgaatataattccagctgatggattagattgcactggagcatttatttgggtaccttctccccaatat |
500 |
Q |
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| T |
1433179 |
caagacggttgcttcttcctttgaatataattccagctgatggattagattgcactggagcatttatttgggtaccttctccccaatat |
1433267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 290 - 459
Target Start/End: Original strand, 1421806 - 1421977
Alignment:
| Q |
290 |
atttaaacggtaacttcttccacgaaaagcaattccatcaccctgattttgctgctgaggtgaagaagcattaatgccggttgtttcctgtgaagt---- |
385 |
Q |
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| T |
1421806 |
atttaaatggtaacttcttccacgaaaagtaat-ccatcaccctgattttgctgctgagcggaagaagcat---tgctacttgtttgccgcgaagtactt |
1421901 |
T |
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| Q |
386 |
--gcttcttgttgttgtttgatttccaccaagacggttgcttcttcctttgaatataattccagctgatggattag |
459 |
Q |
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| T |
1421902 |
cgccttcatcttgctgcttgagttccagcaagacggttgcttcttcctctgaatataattccagctgatggattag |
1421977 |
T |
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