View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7586_low_3 (Length: 487)
Name: NF7586_low_3
Description: NF7586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7586_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 131 - 471
Target Start/End: Original strand, 4296140 - 4296500
Alignment:
| Q |
131 |
ctacagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4296140 |
ctacagaattgctgctagggcaccatatcaaacaagtaaccaaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
4296239 |
T |
|
| Q |
231 |
tcaccacaagaccacagatcagaatgtagctccagctctgtgtttctttaact---------------ctatatatctatgaactaaatgtttgtgtatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4296240 |
tcaccacaagaccacagatcagaatgtagctccagctctgtgtttctttaacttttctttgtttaactctatatatctatgaactaaatgtttgtgtatg |
4296339 |
T |
|
| Q |
316 |
ttgtggctcatgcttattagtacccataattaattaag-----tgtagttctgattgacccaaaagaagtgtaattctggaaacctctacattcactgta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4296340 |
ttgtggctcatgcttattagtacccataattaattaagaagagtgtagttctgattgacccaaaagaagtctaattctggaaacctctacattcactgta |
4296439 |
T |
|
| Q |
411 |
tatgcatctatttagcagtgttgttatagaaaatgtcctcaataatcagtatgatcattct |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4296440 |
tatgcatctatttagcagtgttgttatagaaaatgtcctcaataatcaatatgatcattct |
4296500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 4301628 - 4301727
Alignment:
| Q |
131 |
ctacagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
230 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4301628 |
ctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaattcatgtcatggctctccttggcaccacaa |
4301727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 4296018 - 4296078
Alignment:
| Q |
10 |
aagaatattatccccttactttttgtttcgaaatagtttgagtcgtggcaaattgataaac |
70 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4296018 |
aagaaaattatccccttactttttgtttcgaaatagtttgagtcgtggcaaattgataaac |
4296078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 4307367 - 4307472
Alignment:
| Q |
134 |
cagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaatca |
233 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| || |||| || | |||||| |||||| |||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
4307367 |
cagaattgctgccaaggcaccatatcaaacaagcaatccaacaaccattaataaaccaattgatgaatctatgacatggctctctttggcaccacaatca |
4307466 |
T |
|
| Q |
234 |
ccacaa |
239 |
Q |
| |
|
|||||| |
|
|
| T |
4307467 |
ccacaa |
4307472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 4311923 - 4312024
Alignment:
| Q |
134 |
cagaattgctgctagggcaccatatcaaacaagtaacccaaaaaa---ccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
230 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||| ||| | || ||||||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
4311923 |
cagaattgctgcaaaggcaccttatcaaacaagtaatccagcagcattccttaataagccaattgatgaatccatgtcatggctatccttggcaccacaa |
4312022 |
T |
|
| Q |
231 |
tc |
232 |
Q |
| |
|
|| |
|
|
| T |
4312023 |
tc |
4312024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 4301865 - 4301904
Alignment:
| Q |
299 |
ctaaatgtttgtgtatgttgtggctcatgcttattagtac |
338 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
4301865 |
ctaaatatttgtgaatgttgtggctcatgcttattagtac |
4301904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 423
Target Start/End: Original strand, 4303040 - 4303130
Alignment:
| Q |
330 |
tattagtacccataattaattaagtgtagttctgattgacc-caaaagaagtgtaattctggaaacctctacattcactgtatatgcatctattt |
423 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||| ||| || |||||||||| ||||||| ||||||| |
|
|
| T |
4303040 |
tattagtacccataattaa--gagtgtagttctgatttacctcaaaagaattgtaattttggttac--ttacattcactatatatgcgtctattt |
4303130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University