View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7586_low_4 (Length: 345)
Name: NF7586_low_4
Description: NF7586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7586_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 28921908 - 28922241
Alignment:
| Q |
1 |
tcaatactcacatcctcttcatcactgtcacttaacactgtagcatcattgacgatcaccttaacgggatcagcaaccgtaacacttcgcctttccctta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| |
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| T |
28921908 |
tcaatactcacatcctcttcatcactgtcacttaacactgtagcatcattgacgatcaccttaacgggatcagcaaccgaagcgcttcgcctttccttta |
28922007 |
T |
|
| Q |
101 |
ctgcatgattggcatccatgtcagtactcagatttctgcaatctacatcatcagaagcagatatagtgttacttgattgaggcaagccacatttttctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922008 |
ctgcatgattggcatccatgtcagtactcagatttctgcaatttacatcatcagaagcagatatagtgttacttgattgaggcaagccacatttttctgg |
28922107 |
T |
|
| Q |
201 |
gtttaaggtctgacaattagagtttgattctttaaggagtgcaggtagttgttcaacaggggcaggaaaggctggatcatcttggttatttttcacagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922108 |
gtttaaggtctgacaattagagtttgattctttaagaagtgcagatagttgttcaacaggggcaggaaaggctggatcatcttggttatttttcacagga |
28922207 |
T |
|
| Q |
301 |
gattttggacctaagtcatgaaaattaacacagg |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
28922208 |
gattttggacctaagtcatgaaaattaacacagg |
28922241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 28912419 - 28912653
Alignment:
| Q |
8 |
tcacatcctcttcatcactgtcacttaacactgtagcatcattgacgatcaccttaacgggatcagcaaccgtaacacttcgcctttcccttactgcatg |
107 |
Q |
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|||||||||||||||||||||||||||| || || ||||||||| ||| ||||||||||||| | ||| ||||| |||||||||||| |||||| ||| |
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| T |
28912419 |
tcacatcctcttcatcactgtcacttaaaacaataacatcattgatgattgccttaacgggatctgaaacagtaacgcttcgcctttcctttactgtatg |
28912518 |
T |
|
| Q |
108 |
attggcatccatgtcagtactcagatttctgcaatctacatcatcagaagcagatatagtgttacttgattgaggcaagccacatttttctgggtttaag |
207 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
28912519 |
attggcatccatgttaatactcagatttctgcaatctacatcctcagaagcagatgtag---tacttggttgaggcaagccacatttttttgggtttaag |
28912615 |
T |
|
| Q |
208 |
gtctgacaattagagtttgattctttaaggagtgcagg |
245 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
28912616 |
gtctgacaattagagtttgattctttaagaagtgcagg |
28912653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 28897909 - 28898137
Alignment:
| Q |
3 |
aatactcacatcctcttcatcactgtcacttaacactgtagcatcattgacgatcaccttaacgggatcagcaaccgtaacacttcgcctttcccttact |
102 |
Q |
| |
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|||| |||||||||||||||| ||||||||||| | || |||||||||| || ||||||| |||||||||| | | |||||||||||| ||||| |
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| T |
28897909 |
aatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtcgccttaacaagatcagcaacagcagggcttcgcctttcctttact |
28898008 |
T |
|
| Q |
103 |
gcatgattggcatccatgtcagtactcagatttctgcaatctacatcatcagaagcagatatagtgttacttgattgaggcaagccacatttttctgggt |
202 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||| |||| | |
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| T |
28898009 |
gtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagcagatatagtgttacttggttgaggcaagctacattttgctggat |
28898108 |
T |
|
| Q |
203 |
ttaaggtctgacaattagagtttgattct |
231 |
Q |
| |
|
|| ||| |||||| |||||||||||||| |
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| T |
28898109 |
atagggtttgacaactagagtttgattct |
28898137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 28930985 - 28931170
Alignment:
| Q |
10 |
acatcctcttcatcactgtcacttaacactgtagcatcattgacgatcaccttaacgggatcagcaaccgtaacacttcgcctttcccttactgcatgat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| || |||||| |||||||||||| |||| ||| | ||||| |||||| |||| |
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| T |
28930985 |
acatcctcttcatcactgtcacttaacacaataaaatcattgacagtcggcttaacaggatcagcaaccataacgctttgaatttcctttactgtctgat |
28931084 |
T |
|
| Q |
110 |
tggcatccatgtcagtactcagatttctgcaatctacatcatcagaagcagatatagtgttacttgattgaggcaagccacatttt |
195 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28931085 |
tggcatccatgttagtattcagatttctgcaatctacatcataagaagcagatatagtgttacttggttgaggcaagccacatttt |
28931170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 28912696 - 28912779
Alignment:
| Q |
249 |
ttgttcaacaggggcaggaaaggctggatcatcttggttatttttcacaggagattttggacctaagtcatgaaaattaacaca |
332 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28912696 |
ttgttcaacagtggcaggaaagactggatcatcttggttatttttcaccggagattttggacctaagtcatgaaaattaacaca |
28912779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 28888258 - 28888420
Alignment:
| Q |
16 |
tcttcatcactgtcacttaacactgtagcatcattgacgatcaccttaacgggatcagcaaccgtaacacttcgcctttcccttactgcatgattggcat |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||| |||| || ||||| |||||| |||| ||| ||||||| |||||| |||| |||| |
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| T |
28888258 |
tcttcatcactgtcacttaacacaataacatcattgacaatcgccttgacaggatccgcaaccataacgcttttcctttcctttactgtttgatcagcat |
28888357 |
T |
|
| Q |
116 |
ccatgtcagtactcagatttctgcaatctacatcatcagaagcagatatagtgttacttgatt |
178 |
Q |
| |
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|||| | || || ||||||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
28888358 |
ccatattagaacctagatttctgcaatctacatcagcagaagcatatatagcattacttgatt |
28888420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 28898203 - 28898287
Alignment:
| Q |
249 |
ttgttcaacaggggcaggaaaggctggatcatcttggttatttttcacaggagattttggacctaagtcatgaaaattaacacag |
333 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||| |||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
28898203 |
ttgttcaacagtggcaggaaaggctgtttcatctttgttttttttcactgtagattttggacctaagtcatgaaaatcaacacag |
28898287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 28888536 - 28888609
Alignment:
| Q |
261 |
ggcaggaaaggctggatcatcttggttatttttcacaggagattttggacctaagtcatgaaaattaacacagg |
334 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
28888536 |
ggcaggaaaggctgtaccatcttgattatttttcactggagtttttggacctaagtcatgaaaagtaacacagg |
28888609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 28931296 - 28931371
Alignment:
| Q |
249 |
ttgttcaacaggggcaggaaaggctggatcatcttggttatttttcacaggagattttggacctaagtcatgaaaa |
324 |
Q |
| |
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|||| |||||| ||||||||||| || ||||||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
28931296 |
ttgtacaacagtggcaggaaaggttgtatcatcttggttatttttcactggagtttttggacctaagtaatgaaaa |
28931371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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