View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7586_low_5 (Length: 292)
Name: NF7586_low_5
Description: NF7586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7586_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 6753129 - 6753021
Alignment:
| Q |
181 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
280 |
Q |
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| T |
6753129 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
6753030 |
T |
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| Q |
281 |
catagccta |
289 |
Q |
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| T |
6753029 |
catagccta |
6753021 |
T |
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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 1811405 - 1811513
Alignment:
| Q |
181 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
1811405 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacgagcttcagaaattgcacaattct |
1811504 |
T |
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| Q |
281 |
catagccta |
289 |
Q |
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| T |
1811505 |
catagccta |
1811513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 1028252 - 1028341
Alignment:
| Q |
42 |
gcggagttaggtgggatatcaacggtgttatcatcaccatcaccaccattgaatccggtacgacttgcataatagataggacagaacaga |
131 |
Q |
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| T |
1028252 |
gcggagttaggtgggatatgaacggtggtatcatcaccatcaccaccattgaatccggtacaacttgcataatagataggacagaacaga |
1028341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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