View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7587_high_19 (Length: 201)

Name: NF7587_high_19
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7587_high_19
NF7587_high_19
[»] chr6 (8 HSPs)
chr6 (18-185)||(19734666-19734835)
chr6 (73-185)||(19734998-19735110)
chr6 (56-184)||(21995671-21995799)
chr6 (29-185)||(18019262-18019421)
chr6 (29-146)||(19219271-19219388)
chr6 (77-178)||(22559679-22559779)
chr6 (109-184)||(10358567-10358644)
chr6 (29-185)||(33317576-33317734)
[»] chr4 (13 HSPs)
chr4 (29-178)||(11421705-11421854)
chr4 (29-185)||(19374057-19374214)
chr4 (29-185)||(28917208-28917367)
chr4 (71-185)||(19363121-19363233)
chr4 (29-185)||(32637195-32637352)
chr4 (29-185)||(4546773-4546932)
chr4 (84-185)||(11483293-11483397)
chr4 (29-185)||(15462211-15462370)
chr4 (29-185)||(34976262-34976421)
chr4 (29-179)||(9488262-9488415)
chr4 (110-185)||(1942400-1942476)
chr4 (111-171)||(5524304-5524365)
chr4 (106-167)||(9538689-9538750)
[»] chr2 (7 HSPs)
chr2 (29-174)||(24763106-24763251)
chr2 (71-185)||(19617145-19617259)
chr2 (20-137)||(37443928-37444046)
chr2 (71-184)||(29801184-29801298)
chr2 (29-171)||(15341476-15341618)
chr2 (29-185)||(24228647-24228806)
chr2 (35-126)||(32739434-32739526)
[»] chr7 (14 HSPs)
chr7 (73-185)||(31189850-31189962)
chr7 (35-185)||(18257007-18257157)
chr7 (29-177)||(19392862-19393010)
chr7 (71-185)||(42150108-42150222)
chr7 (29-185)||(10666497-10666656)
chr7 (29-185)||(24442809-24442968)
chr7 (71-185)||(8465709-8465826)
chr7 (29-185)||(18258557-18258715)
chr7 (29-182)||(34129287-34129442)
chr7 (29-182)||(41680401-41680557)
chr7 (84-185)||(19231598-19231702)
chr7 (29-185)||(47166293-47166451)
chr7 (71-166)||(28131293-28131389)
chr7 (111-170)||(25845037-25845097)
[»] scaffold0466 (1 HSPs)
scaffold0466 (34-185)||(10323-10474)
[»] chr5 (12 HSPs)
chr5 (71-179)||(39535901-39536008)
chr5 (29-131)||(5098414-5098516)
chr5 (29-185)||(20941737-20941896)
chr5 (71-185)||(22941961-22942078)
chr5 (29-185)||(25804818-25804977)
chr5 (71-185)||(26245813-26245929)
chr5 (71-185)||(31097526-31097643)
chr5 (29-182)||(9811166-9811321)
chr5 (29-182)||(12703407-12703562)
chr5 (29-185)||(12764423-12764581)
chr5 (106-168)||(20099814-20099876)
chr5 (29-131)||(39428205-39428308)
[»] chr3 (7 HSPs)
chr3 (29-177)||(14147739-14147887)
chr3 (70-168)||(26817022-26817119)
chr3 (29-185)||(21399502-21399663)
chr3 (71-185)||(15316651-15316767)
chr3 (71-185)||(21034948-21035065)
chr3 (29-185)||(25978160-25978319)
chr3 (34-185)||(15845974-15846128)
[»] scaffold0111 (1 HSPs)
scaffold0111 (71-178)||(27260-27367)
[»] chr1 (8 HSPs)
chr1 (34-185)||(22613201-22613355)
chr1 (29-185)||(636681-636840)
chr1 (29-185)||(43801798-43801957)
chr1 (71-185)||(8728374-8728488)
chr1 (29-185)||(47666918-47667077)
chr1 (71-185)||(19705914-19706031)
chr1 (29-185)||(28134156-28134315)
chr1 (29-185)||(35936034-35936193)
[»] scaffold0112 (1 HSPs)
scaffold0112 (29-185)||(893-1052)
[»] chr8 (10 HSPs)
chr8 (29-178)||(18836065-18836213)
chr8 (29-185)||(21970043-21970202)
chr8 (84-185)||(8370741-8370845)
chr8 (29-185)||(25611905-25612064)
chr8 (29-185)||(6431597-6431756)
chr8 (29-185)||(22658927-22659086)
chr8 (29-166)||(26652724-26652862)
chr8 (29-184)||(2962360-2962517)
chr8 (115-185)||(26241195-26241267)
chr8 (112-171)||(8781390-8781450)
[»] scaffold0389 (1 HSPs)
scaffold0389 (29-185)||(872-1031)
[»] scaffold0023 (1 HSPs)
scaffold0023 (69-169)||(108598-108696)
[»] scaffold0017 (1 HSPs)
scaffold0017 (29-185)||(128206-128365)
[»] scaffold0086 (1 HSPs)
scaffold0086 (29-175)||(54486-54633)
[»] scaffold0686 (1 HSPs)
scaffold0686 (107-185)||(8026-8106)
[»] scaffold0006 (1 HSPs)
scaffold0006 (110-185)||(66924-67000)
[»] scaffold0022 (1 HSPs)
scaffold0022 (28-124)||(73626-73723)
[»] scaffold0001 (1 HSPs)
scaffold0001 (29-133)||(138141-138246)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 19734666 - 19734835
Alignment:
Q  18 aacacaagggtt--attcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaa 115  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19734666 aacacaagggttctattcatagaactcctagtgagctctccaagtaagaagtaattattgggcttccgtaagcccattaacgagtttagtcttttgctaa 19734765  T
Q  116 ctaattagcgttatttgttaaatgcacccatcatataactcttacttatatttctcttttgactgttctt 185  Q
    |||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19734766 ctaattaatgttatttgctaaacgcacccatcatataactcttacttatatttctcttttgactgttctt 19734835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 19734998 - 19735110
Alignment:
Q  73 ttgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttctct 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  19734998 ttgggcttccgtaagcccattaacgagtttagtcttttgctaactaattaatgttatttgctaaacgcacccatcatataactcttacttatatttctct 19735097  T
Q  173 tttgactgttctt 185  Q
    |||||||||||||    
T  19735098 tttgactgttctt 19735110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 21995799 - 21995671
Alignment:
Q  56 caagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataact 155  Q
    ||||| ||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||  |||| ||||||||||||||| |    
T  21995799 caagtcagaagtcattattggacttccgtaagcccattaatgagtttagtcttttgctaactaattagtgttaatttctaaacgcacccatcatataagt 21995700  T
Q  156 cttacttatatttctcttttgactgttct 184  Q
    |||| ||||||||||||||||||||||||    
T  21995699 cttatttatatttctcttttgactgttct 21995671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 18019262 - 18019421
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||| | ||| ||| | ||||| ||||||   |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||||||    
T  18019262 tatttatagaactctttgtgtgctatgcaagtcagaagtcactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagcgtt 18019361  T
Q  128 atttgttaaatgcacccatcatataactcttacttatatttct--cttttgactgttctt 185  Q
    ||||  |||| |||||| | ||||||||| |||||||||||||  | |||||||||||||    
T  18019362 atttactaaacgcaccccttatataactcgtacttatatttctcacctttgactgttctt 18019421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 19219388 - 19219271
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| |||||||||| |||| | ||| ||||| |||| |   |||||| ||| |||||||||||||||  |||||||||||| |||||||||||||||||    
T  19219388 tatttatagaactccaagtgtgttctgcaagtcagaatttactattggactttcgtaagcccattaactcgtttagtcttttactaactaattagcgtta 19219289  T
Q  129 tttgttaaatgcacccat 146  Q
    |||| |||| ||||||||    
T  19219288 tttgctaaacgcacccat 19219271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 22559679 - 22559779
Alignment:
Q  77 gcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttctcttttg 176  Q
    ||||||| |||||||||||| ||| ||   |||||||||||||||||| | ||||  ||||  |||||||||||||| |||||| |||||||||||||||    
T  22559679 gcttccgcaagcccattaactagtgtaactttttgctaactaattagcat-attttctaaacacacccatcatataagtcttacgtatatttctcttttg 22559777  T
Q  177 ac 178  Q
    ||    
T  22559778 ac 22559779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 10358567 - 10358644
Alignment:
Q  109 ttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct--cttttgactgttct 184  Q
    ||||||||| ||||| |||||||| |||| ||||||||| ||||| ||||||||||||||||  |||||||| |||||    
T  10358567 ttgctaactgattagtgttatttgctaaaggcacccatcttataagtcttacttatatttcttccttttgaccgttct 10358644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 33317734 - 33317576
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| |||||||| || ||| ||||| ||||| |||||    ||| ||||||| ||||||||| ||||  |||||||  || ||||||||||||||||||    
T  33317734 tatttatagaacttcttgtgtgctctgcaagtcagaagccactatggggcttcagtaagcccaataacatgtttagtaattctgctaactaattagcgtt 33317635  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || | ||  ||||||||||||||||||||||||    
T  33317634 atttactaaacgcaccc-ttatataagtcatgcttatatatttctcttttgactgttctt 33317576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 11421854 - 11421705
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| ||||||||||||||| ||||| ||||| |||||||  ||||||||||||||||||||| || |||||||||||||||| |||||||||||||||     
T  11421854 tatttatagaactcctagtgtgctctgcaagtcagaagtatctattgggcttccgtaagcccaatagcgagtttagtcttttgttaactaattagcgttc 11421755  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttctcttttgac 178  Q
    |||  |||| ||||||||||||||| ||||||||||||||||||||||||    
T  11421754 ttttctaaacgcacccatcatataagtcttacttatatttctcttttgac 11421705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 19374214 - 19374057
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| ||||||||||||| | | ||| ||||| |||| |   |||||| ||||||||||||||||||||  ||||| ||| |||||||||||||| | ||    
T  19374214 tatttatagaactcctagcgtgttctgcaagtcagaaatcactattggtcttccgtaagcccattaacgcatttagccttctgctaactaattagtgata 19374115  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttct-cttttgactgttctt 185  Q
    |||| |||| ||||||||  ||||| ||||| |||||||||| |||||||||||||||    
T  19374114 tttgctaaacgcacccatattataagtcttatttatatttctccttttgactgttctt 19374057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 28917208 - 28917367
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||||||    
T  28917208 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccagtaacgagtttagtagttttgctaactaattagcgtt 28917307  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  28917308 atttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 28917367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 19363233 - 19363121
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    ||||||||||| ||||||||||||||  ||| |  |||||||||||| ||||| |||||||| |||| |||||||| ||  || ||||||||||||||||    
T  19363233 tattgggcttctgtaagcccattaacttgttaa--cttttgctaactgattagtgttatttgctaaacgcacccataatgcaagtcttacttatatttct 19363136  T
Q  171 cttttgactgttctt 185  Q
    ||||||| |||||||    
T  19363135 cttttgattgttctt 19363121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 32637352 - 32637195
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| |||||||||||| |  ||||| ||||| ||||||   |||||| ||||||||||||||||| ||  || |  ||| ||||||||||||||| |||    
T  32637352 tatttatagaactcctaatatgctctgcaagtcagaagtcactattggacttccgtaagcccattagcgcattcaaccttctgctaactaattagcatta 32637253  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttct-cttttgactgttctt 185  Q
    |||| |||  ||||||||  ||| | |||||||||||||||| |||||||| ||||||    
T  32637252 tttgctaagcgcacccatattattagtcttacttatatttctccttttgaccgttctt 32637195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 4546932 - 4546773
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| |||||||||||  || ||||| ||||| ||||||   ||||||||||| ||||||||| ||||| |||||||  || |  |||||||||||||||    
T  4546932 tatttatagaactccttatgtgctctgcaagtcagaagtcactattgggcttcagtaagcccaataacgtgtttagtaattcttataactaattagcgtt 4546833  T
Q  128 atttgttaaatgcacccatcatataactcttacttatat--ttctcttttgactgttctt 185  Q
    ||||  |||| ||||||   |||||| || |||||||||  |||||||||||||||||||    
T  4546832 atttactaaacgcaccccctatataagtcatacttatatatttctcttttgactgttctt 4546773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 11483293 - 11483397
Alignment:
Q  84 taagcccattaacgagtttagtc-ttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatttctcttttgactg 180  Q
    ||||| || |||||||||||||  |||||||||||||||||||||||||  |||| ||| || | |||||| || ||||  |||||||||||||||||||    
T  11483293 taagctcaataacgagtttagtagttttgctaactaattagcgttatttactaaacgcatcccttatataagtcgtacttatatatttctcttttgactg 11483392  T
Q  181 ttctt 185  Q
    |||||    
T  11483393 ttctt 11483397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 15462370 - 15462211
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||| ||||| ||    
T  15462370 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattttgctaactagttagcttt 15462271  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||| ||||||||||||||||    
T  15462270 atttactaaacgcaccccttatataagtcgtacttatatatttgtcttttgactgttctt 15462211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 34976421 - 34976262
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  || |||||||||||||| |||    
T  34976421 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattctgctaactaattagtgtt 34976322  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||| ||||||    
T  34976321 atttactaaacgcaccccttatataagtcatacttatatatttctcttttgacggttctt 34976262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 9488415 - 9488262
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||| | ||| ||||| ||||| ||||||   ||||||||||| ||||||||| ||||| |||||||  || || |||||||||||||||    
T  9488415 tatttatagaactctttgtgtgctctgcaagtcagaagtcactattgggcttcagtaagcccaataacgtgtttagtaattctgataactaattagcgtt 9488316  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgact 179  Q
    ||||  |||| |  ||| | |||||| || ||||  ||||||||||||||||||    
T  9488315 atttactaaacgtgccccttatataagtcatacttatatatttctcttttgact 9488262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 1942476 - 1942400
Alignment:
Q  110 tgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatat--ttctcttttgactgttctt 185  Q
    |||||||||||||||||| |||  |||| |||||| | |||||| || |||||||||  |||||||||||||||||||    
T  1942476 tgctaactaattagcgttgtttactaaacgcaccctt-atataagtcatacttatatatttctcttttgactgttctt 1942400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 5524304 - 5524365
Alignment:
Q  111 gctaactaattagcgttatttgttaaatgca-cccatcatataactcttacttatatttctc 171  Q
    ||||||||||||||   ||||| |||||||| |||||| ||||| |||||||||||||||||    
T  5524304 gctaactaattagcaacatttgctaaatgcagcccatcttataagtcttacttatatttctc 5524365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 9538750 - 9538689
Alignment:
Q  106 cttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatt 167  Q
    ||||||||||| |||||  |||||||  |||| |||||||| |||||| |||||||||||||    
T  9538750 cttttgctaaccaattaatgttattttctaaacgcacccataatataagtcttacttatatt 9538689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 24763106 - 24763251
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| ||||||||||||||| ||| | ||||| | ||||   |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  24763106 tatttatagaactcctagtgtgctttgcaagtcaaaagtcactattaggctttcgtaagcccaataacgagtttagtcttttgctaactaattagcgtta 24763205  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttctcttt 174  Q
    |||  ||||| |||||||||||||| ||||||||||||||||||||    
T  24763206 tttactaaatacacccatcatataagtcttacttatatttctcttt 24763251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 19617259 - 19617145
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||  |||| | || |||||||||| || |||||||||||||    
T  19617259 tattgggctttcgtaagcccaataacgagtttagtcttttgctaactaattagcgttatttactaaacgtacacatcatataagtcatacttatatttct 19617160  T
Q  171 cttttgactgttctt 185  Q
    ||||| || ||||||    
T  19617159 ctttttaccgttctt 19617145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 37444046 - 37443928
Alignment:
Q  20 cacaagggtt--attcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaact 117  Q
    ||||||||||  ||| ||||||||||||||| ||||| |||||  |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37444046 cacaagggttcaatttatagaactcctagtgtgctctgcaagtcggaagtcattattgggcttccgtaagcccattaacga-tttagtcttttgctaact 37443948  T
Q  118 aattagcgttatttgttaaa 137  Q
    ||||||||||||||| ||||    
T  37443947 aattagcgttatttgctaaa 37443928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 29801298 - 29801184
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    |||||| |||||||||||||||||||   |||||  ||||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  29801298 tattggacttccgtaagcccattaacccatttagcattttgctaaataattagtgttatttgttaaacgcacccatcttataagtcttacttatatttct 29801199  T
Q  171 -cttttgactgttct 184  Q
     |||||||| |||||    
T  29801198 ccttttgaccgttct 29801184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 15341476 - 15341618
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| |||||| |||||||| | ||| ||||| |||| |   ||||||||| |||||| ||||||||||  ||||| | | |||||||||||||||||||    
T  15341476 tatttatagaattcctagtgtgttctgcaagtcagaaattaatattgggctaccgtaaccccattaacgcatttagccctctgctaactaattagcgtta 15341575  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttctc 171  Q
    | || ||||  |||||||| ||||| ||||||||||| |||||    
T  15341576 tctgctaaacacacccatcttataagtcttacttatagttctc 15341618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 24228647 - 24228806
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| | |||    |||||| ||||  |||||||| ||||| |||||||  ||||| |||||||||| ||||    
T  24228647 tatttatagaactccttgtgtgctctgcaagtcaaaagccactattggacttcattaagcccaataacgtgtttagtaattttgttaactaattaacgtt 24228746  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  ||||||||||| | |||||| || || |  |||||||||||||| |||||||||    
T  24228747 atttactaaatgcaccccttatataagtcatatttatatatttctcttttaactgttctt 24228806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 32739434 - 32739526
Alignment:
Q  35 tagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgt 126  Q
    |||||||||||||| ||| | ||||| | ||||   ||||||||| |  |||||||| |||||||||||||  ||||||||||||||||||||    
T  32739434 tagaactcctagtgtgctatgcaagtcaaaagtcactattgggctacaataagcccaataacgagtttagtaattttgctaactaattagcgt 32739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 1e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 31189850 - 31189962
Alignment:
Q  73 ttgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttctct 172  Q
    |||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||    
T  31189850 ttgggcctccgtaatctcattaacgagtttagtattttgctaactaattagcgttatttgctaaacgcacccatcatataagtcttacttgtatttctct 31189949  T
Q  173 tttgactgttctt 185  Q
    || ||| ||||||    
T  31189950 ttagaccgttctt 31189962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 18257007 - 18257157
Alignment:
Q  35 tagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgtt 134  Q
    ||||||||||||||  |||| ||||| |||||    ||||| | || |||||||| | |||| ||||||||||||||||||||||||| ||||||||  |    
T  18257007 tagaactcctagtgttctctgcaagtcagaagccactattgagttttcgtaagccaaataacaagtttagtcttttgctaactaattaacgttatttact 18257106  T
Q  135 aaatgcacccatcatataactcttacttatatttctcttttgactgttctt 185  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  18257107 aaatgcacccatcatataagtcttagttatatttctcctttgactgttctt 18257157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 19392862 - 19393010
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| ||||||| ||||||| ||||| ||||| ||||||   | |||||||||||| |||| | ||||||||||||| |||||||||| |||||||||||    
T  19392862 tatttatagaacacctagtgtgctctacaagtcagaagtcactgttgggcttccgtcagcctaataacgagtttagtattttgctaaccaattagcgtta 19392961  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttctcttttga 177  Q
    ||   ||||||||||| | |||||| || ||||||||||||||||||||    
T  19392962 ttcactaaatgcacccgttatataagtcatacttatatttctcttttga 19393010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 42150108 - 42150222
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    ||||||||||||| ||||||| || |||||||||| |||||||||||||||||| ||||||  |||| ||||  || |||||| || |||||||||||||    
T  42150108 tattgggcttccgcaagcccaatagcgagtttagtattttgctaactaattagcattatttaataaacgcacttattatataagtcatacttatatttct 42150207  T
Q  171 cttttgactgttctt 185  Q
    |||||||| ||||||    
T  42150208 cttttgaccgttctt 42150222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 10666497 - 10666656
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||||||||| ||||| ||||| ||||||   |||| ||||||  |||||||| |||||||||||||  || ||||||||||||||||||    
T  10666497 tatttatagaactcctagtgtgctctgcaagtcagaagtcactattaggcttcattaagcccaataacgagtttagtaattctgctaactaattagcgtt 10666596  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| ||| || | |||||| || ||||  ||||||| ||||||||||||||||    
T  10666597 atttactaaacgcatcccttatataagtcatacttatatatttttcttttgactgttctt 10666656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 24442809 - 24442968
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttcc--gtaagcccattaacgagtttagtcttttgctaactaattagcgt 126  Q
    |||| |||||||||||| || ||| |  |||| ||||||   |||||||||| |  ||||||||||||||   ||||| |||||||||||||||||||||    
T  24442809 tatttatagaactcctaatgtgctatggaagtcagaagtccctattgggcttacatgtaagcccattaactcatttagccttttgctaactaattagcgt 24442908  T
Q  127 tatttgttaaatgcacccatcatataactcttacttatatttct-cttttgactgttctt 185  Q
    |||||  |||| ||||||||  ||||| |||||||||||||||| |||||||| ||||||    
T  24442909 tattttctaaacgcacccatattataagtcttacttatatttctccttttgaccgttctt 24442968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 8465826 - 8465709
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatt 167  Q
    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||| ||||||  ||||| ||||| | |||||| || ||||  ||||||    
T  8465826 tattggacttcactaagcccaataacgagtttagtaattttgctaactaattagctttatttactaaatacaccccttatataagtcgtacttatatatt 8465727  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||||||||||    
T  8465726 tctcttttgactgttctt 8465709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 18258557 - 18258715
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| ||||||   ||||||||||| ||||||| || |||| |||||||  || || |||||||||||| ||    
T  18258557 tatttatagaactccttgtgtgctctgcaagtcagaagtcactattgggcttcagtaagccaat-aacgtgtttagtaattctgataactaattagcatt 18258655  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  ||||||||||| | |||||| || ||||  ||||||| ||||||||||||||||    
T  18258656 atttactaaatgcaccccttatataagtcatacttatatatttttcttttgactgttctt 18258715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 34129442 - 34129287
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    ||||||||||| ||||||||| ||||  |||||||  || ||||||||||||| ||||    
T  34129442 tatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattatgctaactaattaacgtt 34129343  T
Q  128 atttgttaaatgcacccatcatataactcttacttatat--ttctcttttgactgtt 182  Q
    ||||  |||| |||||| | |||||| || |||||||||  ||||||||||||||||    
T  34129342 atttactaaacgcaccctt-atataagtcatacttatatatttctcttttgactgtt 34129287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 41680401 - 41680557
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| ||||     |||||| ||||  |||||||| ||||| |||||||  || ||||||||||||||||||    
T  41680401 tatttatagaactccttgtgtgctctgcaagtcagaaaccactattggacttcattaagcccaataacgtgtttagtaattctgctaactaattagcgtt 41680500  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgtt 182  Q
    ||||  |||| |||||| | |||||| || ||||  |||||||||||||||||||||    
T  41680501 atttactaaacgcaccctttatataagtcatacttatatatttctcttttgactgtt 41680557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 19231702 - 19231598
Alignment:
Q  84 taagcccattaacgagtttagtcttt-tgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatttctcttttgactg 180  Q
    |||||||| || ||||||||||  || |||||||| |||||||||||||  |||| |||||| | |||||| || ||||  |||||||||||||||||||    
T  19231702 taagcccaatatcgagtttagtaattctgctaactgattagcgttatttactaaacgcaccccttatataagtcatacttatatatttctcttttgactg 19231603  T
Q  181 ttctt 185  Q
    |||||    
T  19231602 ttctt 19231598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 47166293 - 47166451
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| |||||||||||  || ||||| ||||| |||||    ||||||| ||| ||||||||| ||||| |||||||  || ||||||||||||||||||    
T  47166293 tatttatagaactcctcatgtgctctgcaagtcagaagccactattgggtttcagtaagcccaataacgtgtttagtaattctgctaactaattagcgtt 47166392  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  ||||  ||||| | |||||| || ||||  |||||||||||||||| |||||||    
T  47166393 atttactaaacacaccc-ttatataagtcatacttatatatttctcttttgattgttctt 47166451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 28131389 - 28131293
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatat 166  Q
    ||||||||||| |||| |||| |||||||||||||  || |||||| |||||||||||||||  ||||  ||||| | |||||| || |||||||||    
T  28131389 tattgggcttcagtaaccccaataacgagtttagtaattctgctaaataattagcgttatttactaaacacaccccttatataagtcatacttatat 28131293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 25845037 - 25845097
Alignment:
Q  111 gctaactaattagcgttatttgttaaatgca-cccatcatataactcttacttatatttct 170  Q
    |||||||||||| ||| ||||| |||||||| |||||| ||||| ||||||||| ||||||    
T  25845037 gctaactaattaacgtcatttgctaaatgcaccccatcttataagtcttacttaaatttct 25845097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 10323 - 10474
Alignment:
Q  34 atagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgt 133  Q
    ||||||||||||||| ||| | ||||| ||||||   |||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||      
T  10323 atagaactcctagtgtgctttgcaagtcagaagtcactattggccttccgtaagcacaataacgagtttagtattttgctaactaattagcgttatttac 10422  T
Q  134 taaatgcacccatcatataactcttacttatatttctcttttgactgttctt 185  Q
    || | |||||||| |||||| || ||||||||||| |||||||||| |||||    
T  10423 tatacgcacccattatataagtcatacttatatttttcttttgactattctt 10474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 39536008 - 39535901
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||   |||||||  |||| ||||||||||||||| || |||||||||||||    
T  39536008 tattgggcttccataagcccaataacgagtttagtcttttgctaactaatt-ttgttatttactaaacgcacccatcatataagtcatacttatatttct 39535910  T
Q  171 cttttgact 179  Q
    |||||||||    
T  39535909 cttttgact 39535901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 5098516 - 5098414
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| ||||||||||||||| ||||| ||||| ||||||   |||||| |||| ||||||||| ||||||||||| | ||||||||||||||||| ||||    
T  5098516 tatttatagaactcctagtgtgctctgcaagtcagaagtcactattggacttcagtaagcccaataacgagtttaatattttgctaactaattagtgtta 5098417  T
Q  129 ttt 131  Q
    |||    
T  5098416 ttt 5098414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 20941896 - 20941737
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||| ||    
T  20941896 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcattaagcccaataacgagtttagtaattttgctaactaattagcttt 20941797  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  20941796 atttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 20941737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 22942078 - 22941961
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatt 167  Q
    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||| ||||||  |||| |||||| | |||||| || ||||  ||||||    
T  22942078 tattggacttcactaagcccaataacgagtttagtaattttgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatt 22941979  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||||||||||    
T  22941978 tctcttttgactgttctt 22941961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 25804818 - 25804977
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||| ||| |||||||||||||  |||||||||||||||||| ||    
T  25804818 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagaccaataacgagtttagtaattttgctaactaattagcttt 25804917  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  ||||| ||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  25804918 atttactaaatacaccccttatataagtcgtacttatatatttctcttttgactgttctt 25804977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 26245929 - 26245813
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatt 167  Q
    |||||| |||| ||||||||| |||||||||||||  ||||||||||||||| |||||||||  |||| |||||| | |||||| || ||||  ||||||    
T  26245929 tattggacttcagtaagcccaataacgagtttagtaattttgctaactaatt-gcgttatttactaaacgcaccccttatataagtcatacttatatatt 26245831  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||| ||||||    
T  26245830 tctcttttgaccgttctt 26245813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 31097643 - 31097526
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatt 167  Q
    |||||| ||||  |||||||| |||||||||| ||  |||||||||||||||| ||||||||  |||| |||||| | |||||| || ||||  ||||||    
T  31097643 tattggacttcactaagcccaataacgagtttcgtaattttgctaactaattaacgttatttactaaacgcaccccttatataagtcgtacttatatatt 31097544  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||||||||||    
T  31097543 tctcttttgactgttctt 31097526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 9811166 - 9811321
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    ||||||||||| ||||||||| ||||  |||||||  || ||||||||||||| ||||    
T  9811166 tatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctgctaactaattaacgtt 9811265  T
Q  128 atttgttaaatgcacccatcatataactcttacttata--tttctcttttgactgtt 182  Q
    ||||  |||| |||||| | |||||| || ||||||||  |||||||||||||||||    
T  9811266 atttactaaacgcaccctt-atataagtcatacttatatatttctcttttgactgtt 9811321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 12703407 - 12703562
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    ||||||||||| ||||||||| ||||  |||||||  || ||||||||||||| ||||    
T  12703407 tatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctgctaactaattaacgtt 12703506  T
Q  128 atttgttaaatgcacccatcatataactcttacttata--tttctcttttgactgtt 182  Q
    ||||  |||| |||||| | |||||| || ||||||||  |||||||||||||||||    
T  12703507 atttactaaacgcaccctt-atataagtcatacttatatatttctcttttgactgtt 12703562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 12764423 - 12764581
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    ||||||||||| |||| |||| ||||  |||||||  || ||||||||||||| ||||    
T  12764423 tatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaatcccaataacttgtttagtaattctgctaactaattaacgtt 12764522  T
Q  128 atttgttaaatgcacccatcatataactcttacttata--tttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||||||  ||||||||||||||||||||    
T  12764523 atttactaaacgcaccctt-atataagtcatacttatatatttctcttttgactgttctt 12764581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 20099814 - 20099876
Alignment:
Q  106 cttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatattt 168  Q
    |||||||||||||||||| |||||||| |||||| | |||| |||||| ||||||||||||||    
T  20099814 cttttgctaactaattagtgttatttgctaaatgtatccataatataagtcttacttatattt 20099876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 39428308 - 39428205
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| | ||| ||||| ||||||   ||||||||||| |||||| || ||||| |||||||   |||||||||||||||| |||    
T  39428308 tatttatagaactccttgtgtgttctgcaagtcagaagtcactattgggcttcagtaagctcaataacgtgtttagtaactttgctaactaattagtgtt 39428209  T
Q  128 attt 131  Q
    ||||    
T  39428208 attt 39428205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 14147887 - 14147739
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| |||||| ||||| || ||||| ||||| ||||||   ||||| |||||||||||||||||||   ||||||| |||||||||||||||| ||| |    
T  14147887 tatttatagaaatcctattgtgctctacaagtcagaagtcactattgagcttccgtaagcccattaaatcgtttagtgttttgctaactaattaacgtga 14147788  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttctcttttga 177  Q
    |||| |||||| || |||||||||  |||||||||||||||||||||||    
T  14147787 tttgctaaatgtacgcatcatatatgtcttacttatatttctcttttga 14147739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 26817119 - 26817022
Alignment:
Q  70 ttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatattt 168  Q
    |||||||| ||||||||||||||||||   ||||| | |||||||||| |||| ||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  26817119 ttattgggattccgtaagcccattaacacatttag-catttgctaactgattaacgttatttgctaaacgcacccatcttataagtcttacttatattt 26817022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 21399663 - 21399502
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||||||    
T  21399663 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagcgtt 21399564  T
Q  128 atttgttaaatgcacccatcatataactcttact----tatatttctcttttgactgttctt 185  Q
    ||||  ||||  ||||| | |||||| || ||||    ||||||||||||||||||||||||    
T  21399563 atttactaaacacaccccttatataagtcgtacttatatatatttctcttttgactgttctt 21399502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 15316651 - 15316767
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttata--tt 167  Q
    ||||||||||| ||||||||| ||||  |||||||  || ||||||||||||| ||||||||  ||||||||||| | |||||| || ||||||||  ||    
T  15316651 tattgggcttcagtaagcccaataacttgtttagtaattctgctaactaattaacgttatttactaaatgcaccctt-atataagtcatacttatatatt 15316749  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||||||||||    
T  15316750 tctcttttgactgttctt 15316767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 21035065 - 21034948
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtctt-ttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatt 167  Q
    |||||| ||||  |||||||| |||||||||||||  | |||||||||||||||| ||||||  |||| |||||| | |||||| || ||||  ||||||    
T  21035065 tattggacttcactaagcccaataacgagtttagtaatattgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatt 21034966  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||||||||||    
T  21034965 tctcttttgactgttctt 21034948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 25978160 - 25978319
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| ||||||    |||||| ||| ||||||||| ||||| |||||||  || || |||||||||||||||    
T  25978160 tatttatagaactccttgtgtgctctgcaagtcagaagtcacaattgggtttcagtaagcccaataacgtgtttagtaattctgataactaattagcgtt 25978259  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
     |||  |||| |||||| | |||||| || ||||  ||||||||||||| ||||||||||    
T  25978260 gtttactaaacgcaccccttatataagtcatacttatatatttctctttagactgttctt 25978319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 15845974 - 15846128
Alignment:
Q  34 atagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgttatttg 132  Q
    ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||| ||||||     
T  15845974 atagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagctttattta 15846073  T
Q  133 ttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
     |||| |||||| | ||||||    ||||  ||||||||||||||||||||||||    
T  15846074 ctaaacgcaccccttatataaggtgtacttatatatttctcttttgactgttctt 15846128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 27367 - 27260
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||||||||| || |||  ||||  |||||||||||||| ||||| ||||||||||    
T  27367 tattgggcttccgtaagccgaataacgagtttagtcttttgcaaactaattagcattgtttactaaacacacccatcatataagtcttaattatatttct 27268  T
Q  171 cttttgac 178  Q
    ||||||||    
T  27267 cttttgac 27260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 22613355 - 22613201
Alignment:
Q  34 atagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgttatttg 132  Q
    ||||||||||| ||| ||| | ||||| ||||||   |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||||||||||     
T  22613355 atagaactccttgtgtgctatgcaagtcagaagtcactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagcgttattta 22613256  T
Q  133 ttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
     |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  22613255 ctaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 22613201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 636840 - 636681
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||||||||| ||||| ||||| ||||||   |||| ||||||  |||||||| |||||||||||||  || ||||||||||||||||||    
T  636840 tatttatagaactcctagtgtgctctgcaagtcagaagtcactattaggcttcattaagcccaataacgagtttagtaattctgctaactaattagcgtt 636741  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  ||||  ||||| | |||||| || ||||  ||||||||||| ||||||||||||    
T  636740 atttactaaacacaccccttatataagtcatacttatatatttctctcttgactgttctt 636681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 43801798 - 43801957
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtctttt-gctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| ||||||   |||||  ||||  |||||||||||||||||||||| |||| |||||||||||||| ||    
T  43801798 tatttatagaactccttgtgtgctatgcaagtcagaagtcactattgtacttctctaagcccattaacgagtttagtatttttgctaactaattagcttt 43801897  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  43801898 atttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 43801957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 8728488 - 8728374
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatatttct 170  Q
    |||||||||||| |||||||| |||  |||||||||||||||||| |||| ||| ||||||  ||||  |||| ||||||||| |  |||||||||||||    
T  8728488 tattgggcttccataagcccaataaaaagtttagtcttttgctaaataataagcattatttactaaacacacctatcatataagttatacttatatttct 8728389  T
Q  171 cttttgactgttctt 185  Q
    ||||||||| |||||    
T  8728388 cttttgactattctt 8728374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 47666918 - 47667077
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||||||    
T  47666918 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactaattagcgtt 47667017  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| ||| || | |||||| || ||||  ||||||||||||||||||||||||    
T  47667018 atttactaaacgcatcccttatataagtcgtacttatatatttctcttttgactgttctt 47667077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 19705914 - 19706031
Alignment:
Q  71 tattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatt 167  Q
    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||| ||||||  |||| |||||| | |||||| || ||||  ||||||    
T  19705914 tattggacttcactaagcccaataacgagtttagtaattttgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatt 19706013  T
Q  168 tctcttttgactgttctt 185  Q
    ||||||||||||||||||    
T  19706014 tctcttttgactgttctt 19706031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 28134156 - 28134315
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  ||||||||  ||||||||||||  |||||||||||||||||| ||    
T  28134156 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaacaacgagtttagtaattttgctaactaattagcttt 28134255  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  ||||| ||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  28134256 atttactaaatacacccgttatataagtcgtacttatatatttctcttttgactgttctt 28134315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 35936193 - 35936034
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| ||||||   |||||| ||||  |||||||| |||||||||||||  || ||||||||||||||| ||    
T  35936193 tatttatagaactccttgtgtgctttgcaagtcagaagtcactattggacttcactaagcccaataacgagtttagtaattctgctaactaattagcatt 35936094  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| ||||||   |||||| || ||||  |||||||||||||||| |||||||    
T  35936093 atttactaaacgcaccccctatataagtcatacttatatatttctcttttgattgttctt 35936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 1052 - 893
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  |||||||||||||||||||||    
T  1052 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactaattagcgtt 953  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  952 atttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 18836213 - 18836065
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgtta 128  Q
    |||| |||||||||| |||| | ||| ||||| |||| |   ||||||||||||||||||||||||||   ||||  |||||| |||||||| |||||||    
T  18836213 tatttatagaactccaagtgtgttctgcaagttagaattcaatattgggcttccgtaagcccattaactcatttaaccttttggtaactaatcagcgtta 18836114  T
Q  129 tttgttaaatgcacccatcatataactcttacttatatttctcttttgac 178  Q
     ||| ||| |  |||||||||||||  |||||||||||||||||||||||    
T  18836113 cttgctaact-tacccatcatataagccttacttatatttctcttttgac 18836065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 21970202 - 21970043
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  ||||||||||| |||||||||    
T  21970202 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactgattagcgtt 21970103  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  21970102 atttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 21970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 8370741 - 8370845
Alignment:
Q  84 taagcccattaacgagtttagtctt-ttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatttctcttttgactg 180  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||||  |||| |||||| | |||||| || ||||  |||||||||||||||||||    
T  8370741 taagcccaataacgagtttagtaatattgctaactaattagcgttatttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactg 8370840  T
Q  181 ttctt 185  Q
    |||||    
T  8370841 ttctt 8370845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 25612064 - 25611905
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| ||||||   |||||| ||||   ||||||| |||||||||||||  |||||||||||||||| | ||    
T  25612064 tatttatagaactccttgtgtgctatgcaagtcagaagtcactattggacttcacaaagcccaataacgagtttagtaattttgctaactaattaccatt 25611965  T
Q  128 atttgttaaatgcacccatcatataactcttacttatat--ttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || |||||||||  |||||||||||||||||||    
T  25611964 atttactaaacgcaccccttatataattcgtacttatatatttctcttttgactgttctt 25611905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 6431756 - 6431597
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    ||||||| ||| ||||||||| ||||  |||||||  || ||||||||||||| ||||    
T  6431756 tatttatagaactccttgtgtgctcttcaagtcagaagccactattgggtttcagtaagcccaataacatgtttagtaattctgctaactaattaacgtt 6431657  T
Q  128 atttgttaaatgcacccatcatataactcttacttatat--ttctcttttgactgttctt 185  Q
    ||||  |||| || ||| | |||||| |  |||||||||  |||||||||||||||||||    
T  6431656 atttactaaacgctccccttatataagtaatacttatatatttctcttttgactgttctt 6431597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 22658927 - 22659086
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtcttt-tgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    |||||  ||||  |||||||| |||||||||||||  || | ||||||||||||||||    
T  22658927 tatttatagaactccttgtgtgctctacaagtcagaagccactattgaacttcattaagcccaataacgagtttagtaattctactaactaattagcgtt 22659026  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | || ||| || ||||  ||||||||||||||||| ||||||    
T  22659027 atttactaaacgcaccccttatttaagtcatacttatatatttctcttttgaccgttctt 22659086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 26652724 - 26652862
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||||| ||||| |||||    |||||| ||||  |||||||| |||||||||||||  || |||||||| |||||| ||    
T  26652724 tatttatagaactccttgtgtgctctgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattctgctaactcattagcatt 26652823  T
Q  128 atttgttaaatgcacccatcatataactcttacttatat 166  Q
    ||||  |||| |||||| | |||||| || |||||||||    
T  26652824 atttactaaacgcaccccttatataagtcatacttatat 26652862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 2962360 - 2962517
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| |||||||||||  || ||||| ||||| |||||    ||||||||||| ||||||||| ||||  |||||||  || |||||||||||||  |||    
T  2962360 tatttatagaactccttatgtgctcttcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctgctaactaattaatgtt 2962459  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttct 184  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||| |||||||||||||||    
T  2962460 atttactaaacgcaccc-ttatataagtcatacttatatatttatcttttgactgttct 2962517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 26241267 - 26241195
Alignment:
Q  115 actaattagcgttatttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    |||||||||||||||||  |||| |||||| | |||||| || ||||  |||||||||||| |||||||||||    
T  26241267 actaattagcgttatttactaaacgcaccccttatataagtcgtacttatatatttctcttatgactgttctt 26241195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 8781390 - 8781450
Alignment:
Q  112 ctaactaattagcgttatttgttaaatgca-cccatcatataactcttacttatatttctc 171  Q
    ||||||||||||||||||||| ||||| || ||||   ||||| |||||||||||||||||    
T  8781390 ctaactaattagcgttatttgctaaatacaccccaagttataagtcttacttatatttctc 8781450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 1031 - 872
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  ||||||||||| |||||||||    
T  1031 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactgattagcgtt 932  T
Q  128 atttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    ||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  931 atttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 108598 - 108696
Alignment:
Q  69 gttattgggcttccgtaagcccattaacgagtttagtcttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttatattt 168  Q
    |||| ||||||||| ||||||||||||||  |||| ||||||||||||| |||| |||||||| ||||  ||||||||| ||||| ||||||||||||||    
T  108598 gttactgggcttccataagcccattaacgcattta-tcttttgctaactgattaacgttatttcttaagcgcacccatcttataa-tcttacttatattt 108695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 128365 - 128206
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| |||||| ||||  || ||||| ||||| ||||||   |||||| ||||  |||||||| |||||||||||||  ||||||||||||||||| |||    
T  128365 tatttatagaattccttatgtgctctgcaagttagaagtcactattggacttcattaagcccaataacgagtttagtaattttgctaactaattagtgtt 128266  T
Q  128 atttgttaaatgcacccatcatataactcttacttatat--ttctcttttgactgttctt 185  Q
    ||||  ||||  ||||| | |||||| || |||||||||  |||||||||||||||||||    
T  128265 atttactaaacacaccccttatataagtcatacttatatatttctcttttgactgttctt 128206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 54633 - 54486
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagtc-ttttgctaactaattagcgtt 127  Q
    |||| |||||| |||||||| ||| | ||||| |||| |   ||||||||||| ||||| ||| |||||||||||||  |||||||||||||||| ||||    
T  54633 tatttatagaaatcctagtgtgctttgcaagtcagaaatcactattgggcttcagtaagtccaataacgagtttagtaattttgctaactaattaacgtt 54534  T
Q  128 atttgttaaatgcacccatcatataactcttacttatatttctctttt 175  Q
    ||||  ||||||||||| | |||||| || | ||||||| | ||||||    
T  54533 atttactaaatgcaccccttatataagtcattcttatatatttctttt 54486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 8026 - 8106
Alignment:
Q  107 ttttgctaactaattagcgttatttgttaaatgcacccatcatataactcttact--tatatttctcttttgactgttctt 185  Q
    |||||||||||||||||| ||||||  |||| |||||| | |||||| || ||||  ||||||||||||||||||||||||    
T  8026 ttttgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatttctcttttgactgttctt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 66924 - 67000
Alignment:
Q  110 tgctaactaattagcgttatttgttaaatgcacccatcatataactcttacttata--tttctcttttgactgttctt 185  Q
    |||||||||||||||||| |||  |||| |||||| | |||||| || ||||||||  ||||||||||||||||||||    
T  66924 tgctaactaattagcgttttttactaaacgcaccctt-atataagtcatacttatatatttctcttttgactgttctt 67000  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 73626 - 73723
Alignment:
Q  28 ttattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagc 124  Q
    ||||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  ||||||||||||||||||    
T  73626 ttatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactaattagc 73723  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 138141 - 138246
Alignment:
Q  29 tattcatagaactcctagtgagctctccaagtaagaagtagttattgggcttccgtaagcccattaacgagtttagt-cttttgctaactaattagcgtt 127  Q
    |||| ||||||||||| ||| ||| | ||||| |||||    |||||| ||||  |||||||| |||||||||||||  ||||||||||||| |||||||    
T  138141 tatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattttgctaactaactagcgtt 138240  T
Q  128 atttgt 133  Q
    | ||||    
T  138241 aattgt 138246  T

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