View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_high_2 (Length: 816)
Name: NF7587_high_2
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 49 - 778
Target Start/End: Original strand, 19157450 - 19158206
Alignment:
| Q |
49 |
cgacgaaagcaacaatgaaggcaaccacaacaacaaaaacaaaaacgttgatggccatgatgaatacaactacaataagaggcaacaaggaataccacaa |
148 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19157450 |
cgacggaagcaacaatgaaggcaaccacaacaacaaaaacaaaaacgttgatggccatgatgaatacagctacaataagaggcaacaaggaataccacaa |
19157549 |
T |
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| Q |
149 |
cgagagataacaaagacttaaaaagttgtttatacggttagttctaaaagatgtagatgagttgcaacaatataaaagtggtaagatggtggcgaaaatc |
248 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19157550 |
cgagagataacaaagacttaaagagttgtttatacggttaattctaaaatatgtagatgagttgcaacaatatagaagtggtaagatggtggcgaaaatc |
19157649 |
T |
|
| Q |
249 |
attggaaacgtgggttaaaacataacaattagaagaaagnnnnnnngagttgtgtgtgagttaaactaaagtgtcgtgcagttgtcgtgctattggctct |
348 |
Q |
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|| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19157650 |
atagaaaatgtgggttaaaacataacaattagaagaagaaaaaaaagagttgtgtgtgagttaaactaaagtgtcgtgcagttgtcgtgctattggctct |
19157749 |
T |
|
| Q |
349 |
cgtgccatatagcactgctcaaaaattaaaatagcgaacaaagttttggacgnnnnnnnttaaatattgattatttttccccactaaatttattgaagaa |
448 |
Q |
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| T |
19157750 |
cgtgccatatagcactgcttaaaaattaaaatagcaaacaaagttatagacgaaaaaaattaaatattgattatttttccccactaaatttattgaagaa |
19157849 |
T |
|
| Q |
449 |
attagtgaaattttatatttttctcctctctaaatacctgccattggttttttaatcatttatttattatgcaagtagatataatatcaactatttattt |
548 |
Q |
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| T |
19157850 |
attagtgaaattttatatttttctcctctctaaatacctgccattggctttttaatcatttatttattatgcaagtagatataatatcaactatttattt |
19157949 |
T |
|
| Q |
549 |
ctttatcaatcattcatttgttaacttttagagtgagcatagctatttcttgactatttatttgtgaactactt----------------------gaat |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |
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| T |
19157950 |
ctttatcaatcattcatttgttaacttttagagtgagcatagctatttgttgactatttatttgtgaactatttgaatataaattgttaactatttgaat |
19158049 |
T |
|
| Q |
627 |
ataaatgagtcaaaatcaattatc-----ccatcccataaactcaacattaacaagtttgagattggacttgcctnnnnnnngtttgagacggactcgan |
721 |
Q |
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| T |
19158050 |
ataaatgagtcaatatcaattatcccatcccatcccataaactcaacattaacaagtttgagattggacttgcctaaaaaaagtttgagacggactcgat |
19158149 |
T |
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| Q |
722 |
nnnnnncattattaatattcaaactatacttttaaaagttcaactcagttttttctt |
778 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19158150 |
ttttttcattattaatattcaaactatacttttaaatgttcaactcagttttttctt |
19158206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 40943702 - 40943885
Alignment:
| Q |
102 |
gccatgatgaatacaa-ctacaataagaggcaacaaggaataccacaacgagagataacaaagacttaaaa-agttgtttatacggttagttctaaaaga |
199 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||||| || |||||||| |||||||||||||| ||||||||| |||||| || |||||||| |
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| T |
40943702 |
gccatgatgaatacaaactacaatgagaggcaacaaggaatacgacgacgagagacaacaaagacttaaaggagttgtttacacggttggtcctaaaaga |
40943801 |
T |
|
| Q |
200 |
tgtagatgag-ttgcaacaatataaaagtggtaagatggtggcgaaaatcattggaaacgtgggttaaaacataacaattagaa |
282 |
Q |
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|||||||| | ||||| ||||||| ||||||||||||||||||| ||| ||| | | ||||||||||||||||||||||||||| |
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| T |
40943802 |
tgtagatggggttgcagcaatatagaagtggtaagatggtggcggaaaccatcgaagacgtgggttaaaacataacaattagaa |
40943885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19156680 - 19156732
Alignment:
| Q |
1 |
aactatgttatggcagcaactaatgacaactaagttgtgaggagacaacgacg |
53 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19156680 |
aactatgttgtggcagcaactaatggcaactaagttgtgaggagacaacgacg |
19156732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40942819 - 40942871
Alignment:
| Q |
1 |
aactatgttatggcagcaactaatgacaactaagttgtgaggagacaacgacg |
53 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
40942819 |
aactatgttttggcagcaactaatggcaactaagttgtgtggagacaacgacg |
40942871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 40943931 - 40943964
Alignment:
| Q |
335 |
gtgctattggctctcgtgccatatagcactgctc |
368 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
40943931 |
gtgctattgactctcgtgccatatagcactgctc |
40943964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 45245199 - 45245296
Alignment:
| Q |
184 |
ggttagttctaaaagatgtagatgag-ttgcaacaatataaaagtggtaagatggtggcgaaaatcattggaaacgtgggttaaaacataacaattag |
280 |
Q |
| |
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||||||| |||||| ||||||||| | ||||| |||||| ||||||| |||||| |||| ||| ||||||| |||||||||||||||||| |||||| |
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| T |
45245199 |
ggttagtcctaaaacatgtagatggggttgcagtaatatagaagtggtgagatgggggcggaaaccattggagacgtgggttaaaacataataattag |
45245296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6726798 - 6726884
Alignment:
| Q |
1 |
aactatgttatggcagcaactaatgacaactaagttgtgaggagacaacgacgaaagcaacaatgaaggcaaccacaacaacaaaaa |
87 |
Q |
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|||||||| ||| ||||||||||| ||||||||||||| || | ||||||| || | ||||||||| |||| | ||||||||||| |
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| T |
6726798 |
aactatgtcgtggtagcaactaatggcaactaagttgtgcggcggcaacgacaaaggtgacaatgaagacaactaaaacaacaaaaa |
6726884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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