View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_1 (Length: 869)
Name: NF7587_low_1
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 2 - 450
Target Start/End: Complemental strand, 10537743 - 10537299
Alignment:
| Q |
2 |
gtggagtacgacaatagactcaatgtggaagagactatctgagtggaatggtcgtcacttatcaactggaggcagattggttttgttaaattcagtgttg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10537743 |
gtggagtacgacaatagactcaatgtggaagagact----gagtggaatggtcgtcacttatcaattggaggcagattggttttgttaaattcagtgttg |
10537648 |
T |
|
| Q |
102 |
agtagcatgccattatattacttatctttctataaggcacctaggaaagttatcgaagaattaacgcagattgaaagaagtttcttgcggggaggaggct |
201 |
Q |
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| T |
10537647 |
agtagcataccataatattacttatctttctataaggcacctaggaaagttatcgaagaattaacgcaaattcaaagaagtttcttgcggggaggaggct |
10537548 |
T |
|
| Q |
202 |
tggaaggtagaaggattaacggggtgagctgggacaaagtgtgtttaccgaaagaagataatgtaatttggtcgaaactaatcaagttcaggtacggatc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10537547 |
tggaaggtagaaggattaacggggtgagctgggacaaagtgtgtttaccgaaagaagataatgtaatttggtcgaaactaatcaagttcaggtacggatc |
10537448 |
T |
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| Q |
302 |
aatatcggataaattgcttaataccgaaggtgaaagtggcagcaggatggactcaatttggaaacggggaaaacacatcattttggaaggaagtatggct |
401 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10537447 |
aatatcgggtaaattgcttaataccgaaggtgaaactggcagcaggatggactcaatttggaaacggggaaaacacatcattttggaaggaaatatggct |
10537348 |
T |
|
| Q |
402 |
aggtgagcagagtctttgtcatgagcttccggaattgtatgtggtagct |
450 |
Q |
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| T |
10537347 |
aggtgagcagagtctttgtcatgagcttccggaattgtatgtgttagct |
10537299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 443 - 679
Target Start/End: Complemental strand, 10537283 - 10537047
Alignment:
| Q |
443 |
tggtagctcgaaaaagaaaccggaaaggaagcgcagaagattggagatagagctggcagcgtgttctgaatcatgaagagaacagatttgtagcagagtt |
542 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10537283 |
tggtagcttgaaaaagaaaccggaaaggaagcgcagaagattggagatagagctggcagcgtgttctgaatcatgaagagaacagatttgtagcagagtt |
10537184 |
T |
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| Q |
543 |
gtcgacgaaactggcatgcgcgcacttgcagactgatgtagcagatgcgttctgttggaaacaggaggcaggtttcggattcactgttataagctgctac |
642 |
Q |
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| T |
10537183 |
atcgacgaaactgtcatgcgcgcacctgcagactgatgtagcagatgcgttctgttggaaacaggaggcaggtttcggattcactgttataggctgctac |
10537084 |
T |
|
| Q |
643 |
ctgctgttgtgcagcttgcacgtacgcgacaattatg |
679 |
Q |
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| T |
10537083 |
ctgctgttgtgaagcttgcacgtacgcgacaattatg |
10537047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 741 - 850
Target Start/End: Complemental strand, 10537050 - 10536941
Alignment:
| Q |
741 |
tatgtttggatggagattgcttcaagacaggttacaaagggtggaattgttatgatttgcaactttggagcggctttgcacatcttgtgctagtttgctc |
840 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10537050 |
tatgtttggatggagattgcttcaagacaggttacaaagggtggaattgttatgatttgcaactttggagcggctttgcacatcttgtgctagtttgctc |
10536951 |
T |
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| Q |
841 |
atcattaata |
850 |
Q |
| |
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|||||||||| |
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| T |
10536950 |
atcattaata |
10536941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 455 - 653
Target Start/End: Original strand, 22507089 - 22507287
Alignment:
| Q |
455 |
aaagaaaccggaaaggaagcgcagaagattggagatagagctggcagcgtgttctgaatcatga-agagaacagatttgtagcagagttgtcgacgaaac |
553 |
Q |
| |
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||||||||| | ||| |||| ||||||||||| | ||||||||||| |||||| | || | ||| ||||||||||||||| |||||||||| |||||||| |
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| T |
22507089 |
aaagaaaccaggaagaaagcacagaagattggggctagagctggcaacgtgttttcaacc-tgacagagaacagatttgtggcagagttgttgacgaaac |
22507187 |
T |
|
| Q |
554 |
tggcatgcgcgcacttgcagactgatgtagcagatgcgttctgttggaaacaggaggcaggtttcggattcactgttataagctgctacctgctgttgtg |
653 |
Q |
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|| || | ||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||| | |||||| |||||||||||| |
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| T |
22507188 |
tgtcacctgtacacctgcagactcgtgtagcagatgtcttctgttggaaacaggaggaagctttcggattcactgttagaggctgctgcctgctgttgtg |
22507287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 22506651 - 22506741
Alignment:
| Q |
75 |
agattggttttgttaaattcagtgttgagtagcatg--ccattatattacttatctttctataaggcacctaggaaagttatcgaagaatt |
163 |
Q |
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| T |
22506651 |
agattggttctgttaaactcagtttttagtagcatataccattatattacttctctttctttaaggcacgtaggaagatgatcgaagaatt |
22506741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 22506865 - 22506917
Alignment:
| Q |
309 |
gataaattgcttaataccgaaggtgaaagtggcagcaggatggactcaatttg |
361 |
Q |
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| T |
22506865 |
gataaattgcttaatttcgaacgtgaaaatgacagcaggatggactcaatttg |
22506917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 22506831 - 22506865
Alignment:
| Q |
258 |
gataatgtaatttggtcgaaactaatcaagttcag |
292 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
22506831 |
gataatgtaattaggtcgaaactaatcaagttcag |
22506865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 796 - 851
Target Start/End: Original strand, 23325635 - 23325690
Alignment:
| Q |
796 |
tttgcaactttggagcggctttgcacatcttgtgctagtttgctcatcattaatat |
851 |
Q |
| |
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||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||| |
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| T |
23325635 |
tttgcaattttggagcggttttgcacatcttgtgttagtttgctcgtcattaatat |
23325690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 16845746 - 16845693
Alignment:
| Q |
68 |
tggaggcagattggttttgttaaattcagtgttgagtagcatgccattatatta |
121 |
Q |
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|||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| |
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| T |
16845746 |
tggaggtagattggttttgtcaaactcggtgttgagtagcataccattatatta |
16845693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 804 - 836
Target Start/End: Original strand, 21525326 - 21525358
Alignment:
| Q |
804 |
tttggagcggctttgcacatcttgtgctagttt |
836 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
21525326 |
tttggagcggctttgcacatcttgtgctagttt |
21525358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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