View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_10 (Length: 390)
Name: NF7587_low_10
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 20732162 - 20732527
Alignment:
| Q |
13 |
aatattatgaggtgaaaaaagtaatactctaatccaaatgtaatcgacatgagatcaaaaggcccaattaagaggtagttatatgactatacatattcag |
112 |
Q |
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| T |
20732162 |
aatattatgaggtgaaaaaagtaatactttaatccaaatgaaattgacatgagatcaaaaggcccaattaaggggtagttatatgactttacattttgag |
20732261 |
T |
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| Q |
113 |
tgtattcattcttgcataaatgaaattctttcctattcatcttgtgggtccatcgtattttatatttt-------gtcaccgtttagattctagaattca |
205 |
Q |
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| T |
20732262 |
tgtattcattcttgcataaatgaaattctttcctattcatcttgtgggtccatcgtattttatattttatattttgtctccgttcgaattctagaattca |
20732361 |
T |
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| Q |
206 |
aaccnnnnnnngatgttctacattctagaatctgaactgttaaagagaataaattggtaaatgtgaattcttaatttgtattcatcaattgagtaagtat |
305 |
Q |
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|||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20732362 |
aaccagaa---gatgttatacattctagaatctgaactgttaaagtgaataaattggtaaatgtgaattcttgatttgtattcatcaattgagtaagtat |
20732458 |
T |
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| Q |
306 |
atgtacaagttgaagtcttttaacgcataggctttgacaaatgtatattaaaccaactaacgtaaaata |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20732459 |
atgtacaagttgaagtcttttaacgcataggctttgacaaatgtatattaaaccaactaatgtaaaata |
20732527 |
T |
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