View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_11 (Length: 370)
Name: NF7587_low_11
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 4496753 - 4497094
Alignment:
| Q |
18 |
ctcttttagaattacatttggaaaattgccaaattgataacataaaaccagcaatgaaaacaaatttcacaaatctccaagtctttgatctttcaaataa |
117 |
Q |
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| T |
4496753 |
ctcttttagaattacatttggaaaattgctaaattgataacataaaaccagcaatgaaaacaaatttcacaaatctccaagtctttgatctttcaaataa |
4496852 |
T |
|
| Q |
118 |
caatctcaatcatgaaatcccttcatggttctccaatctaagtacaaaactcttgtccaacttgatttgattagtaactttctacaaggagaaattcctc |
217 |
Q |
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| T |
4496853 |
caatctcaatcatgaaatcccttcatggttctccaatctaagtacaaaactcttgtccaacttgatttgattagtaactttctacaaggagaaattcctc |
4496952 |
T |
|
| Q |
218 |
aaatcatctcaaatcttcaaaactt-aaagactttaattagaccttcaaagaaaccaactcagtggtgcacttcctgattcattcgaccaacttaagcat |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4496953 |
aaatcatctcaaatcttcaaaacttaaaagactttaattagaccttcaaagaaaccaactcagtggtgcacttcctgattcattagaccaacttaagcat |
4497052 |
T |
|
| Q |
317 |
cttgaagttctagatcttagtaacaataccattgtcaattca |
358 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4497053 |
cttgaagttctagatcttagtaacaataccattgtccattca |
4497094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 4331210 - 4330883
Alignment:
| Q |
18 |
ctcttttagaattacatttggaaaattgccaaattgataacataaaaccagcaatgaaaacaaatttcacaaatctccaagtctttgatctttcaaataa |
117 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||| || || ||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4331210 |
ctcttttaaaattacatttggaaaattgccaacttgataacatagaagcaacaaggaaaacaaatttcacaaatctccaagtccttgatctttcaaataa |
4331111 |
T |
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| Q |
118 |
caatctcaatcatgaaatcccttcatggttctccaatctaagtacaaaactcttgtccaacttgatttgattagtaactttctacaaggagaaattcctc |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
4331110 |
caatctcaatcatgaaatcctttcatggttctccaatctaagtac--aactcttgtccaacttgatttgagtagtaacattctacaaggagaaattcctc |
4331013 |
T |
|
| Q |
218 |
aaatcatctcaaatcttcaaaacttaaagactttaattagaccttcaaagaaaccaactcagtggtgcacttcctgattcattcgaccaacttaagcatc |
317 |
Q |
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||||||||||||||||||||||||| || ||| ||||| |||||| |||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
4331012 |
aaatcatctcaaatcttcaaaacttgaaaact----ttagaacttcaaggaaaccaactcagtggtgcacttcctgattcattaggccgacttaagcatc |
4330917 |
T |
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| Q |
318 |
ttgaagttctagatcttagtaacaataccattgt |
351 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
4330916 |
ttgaagttctagatcttagtaagaataccattgt |
4330883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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