View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_12 (Length: 351)
Name: NF7587_low_12
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 593129 - 592806
Alignment:
| Q |
12 |
acctgtggtgatctgtacata-cgctgcaggctggtgctgtgtccggtaaactgacggcggttttaattgaatgatttggctttatgaccttaggcgaga |
110 |
Q |
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| T |
593129 |
acctgtggtgatctgtacataacgctgcaggctggtgctgtgtccggaaaactgactgcggttttaattgaatgatttggctttatgaccttaggcgaga |
593030 |
T |
|
| Q |
111 |
tcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgagt---aacactaatgagtagaaaattaagagaataaatgtt |
207 |
Q |
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| T |
593029 |
tcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgagttataacactaatgagtagaaaattaagagaataaatgtt |
592930 |
T |
|
| Q |
208 |
actccatctgttccctgtgttgtttttctagaaattttgtgtttatattaatttgtcattttcaaatttaaagtagtattaacaatatcaaaaggtaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592929 |
actccatctgttccctgtgttgtttttctagaaattttgtgtttctattaatttgtcattttcaaatttaaagtagtattaacaatatcaaaaggtaaat |
592830 |
T |
|
| Q |
308 |
tttttcccttaccttttaatatat |
331 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
592829 |
tttttcccttaccttttaatatat |
592806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 579292 - 579612
Alignment:
| Q |
12 |
acctgtggtgatctgtacata-cgctgcaggctggtgctgtgtccggtaaactgacggcggttttaattgaatgatttggctttatgaccttaggcgaga |
110 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
579292 |
acctgtggtgatctgtacataacgctgcaggctggtgctgtgtccggaaaactgactgcggttttaattgaatgatttggctttatgaccttaggcgaga |
579391 |
T |
|
| Q |
111 |
tcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgag---taacactaatgagtagaaaattaagagaataaatgtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
579392 |
tcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgagttataacactaatgagtagaaaattaagagaataaatgtt |
579491 |
T |
|
| Q |
208 |
actccatctgttccctgtgttgtttttctagaaattttgtgtttatattaatttgtcattttcaaatttaaagtagtattaac----aatatcaaaaggt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
579492 |
actccatctgttccctgtgttgtttttctagaaattttgtgtttctattaatttgtcattttcaaatttaaagtagtattaactattaacattaaaagga |
579591 |
T |
|
| Q |
304 |
aaattttttcccttacctttt |
324 |
Q |
| |
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|| ||||||||||| |||||| |
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| T |
579592 |
aacttttttcccttgcctttt |
579612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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