View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_13 (Length: 327)
Name: NF7587_low_13
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 23154767 - 23154462
Alignment:
| Q |
1 |
aatgataagtaatccttaaagtatatgaattaaccattttagtctctaaaattcaacatgttagtcctttgcatcttaaaacaatgagtaacgtgacaga |
100 |
Q |
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| T |
23154767 |
aatgataagtaatccttaaagtatatgaattaaccattttagtctctaaaattcaacatgttagtcctttgcatcttaaaacaatgagtaacgtgacaaa |
23154668 |
T |
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| Q |
101 |
tatcatatactttagaannnnnnnnnnnnncatatacaaggactaaatcggagagagtgatatgttcggtacatagtgattagcgatgattttgttccga |
200 |
Q |
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| T |
23154667 |
tatcatatactttaga---gttttttttttcatatacaaggactaaatcggagagagtgatatgttcggtacatagtgattagcgatgattttgttccga |
23154571 |
T |
|
| Q |
201 |
catattaaaaagtcttcaattttttaagacatctttagagaagaaaataaatgattaattttagaaaagtggtgcaggcaacctaaggttaaaataggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
23154570 |
catattaaaaagtcttcaattttttaagacatctttagagaagaaaataaatgattaattttagaaaagtcgtgcaagcaacctaatgttaaaataggca |
23154471 |
T |
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| Q |
301 |
tggtaatag |
309 |
Q |
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||| ||||| |
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| T |
23154470 |
tggcaatag |
23154462 |
T |
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