View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_16 (Length: 282)
Name: NF7587_low_16
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 43715914 - 43716161
Alignment:
| Q |
17 |
tattaaaaccttaccacttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccag |
116 |
Q |
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| T |
43715914 |
tattaaaaccttaccaattgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccag |
43716013 |
T |
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| Q |
117 |
tggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcctcctccatatttttatctgccgtaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
43716014 |
tggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcctcctcctccatatttttatctgccatag |
43716113 |
T |
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| Q |
217 |
tcagagacaacaagaagaagaagctagaaaaaataataacaagttaac |
264 |
Q |
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| T |
43716114 |
tcagagacaacaagaagaagaagctagaaaaaataataacaaattaac |
43716161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 6816803 - 6816638
Alignment:
| Q |
25 |
ccttaccacttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccac |
124 |
Q |
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|||||||| ||| |||| |||||| |||||||||| ||||| ||| | || ||| | ||||| |||||||| |||||||| ||||||||||| ||||| |
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| T |
6816803 |
ccttaccaattgcatgaaaagacacttcaaatatgtcttttc-agtccgattcaagcgttcaaccgtaattctaagatatggttcaacccagtgatccac |
6816705 |
T |
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| Q |
125 |
cagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcc |
191 |
Q |
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| T |
6816704 |
ttgtcctctacaattctggaagacaacttcaataagctttggagctggcacaatatcattatcctcc |
6816638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 52891714 - 52891541
Alignment:
| Q |
17 |
tattaaaaccttaccacttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
52891714 |
tattaaaaccttaccacttgaatgagaagacatttcaaatatgatttt-ccagttctatgcaaacgttcaattgtaattctgagatacggctcaacccag |
52891616 |
T |
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| Q |
117 |
tggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52891615 |
tggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcctcc |
52891541 |
T |
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