View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7587_low_3 (Length: 673)

Name: NF7587_low_3
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7587_low_3
NF7587_low_3
[»] chr4 (9 HSPs)
chr4 (106-663)||(33038617-33039174)
chr4 (19-92)||(33039160-33039233)
chr4 (316-378)||(30305855-30305917)
chr4 (596-638)||(33034984-33035026)
chr4 (316-382)||(10402497-10402563)
chr4 (347-385)||(23142698-23142736)
chr4 (316-378)||(36099135-36099197)
chr4 (289-378)||(45303936-45304024)
chr4 (298-378)||(47929283-47929363)
[»] chr3 (14 HSPs)
chr3 (316-378)||(15085636-15085698)
chr3 (316-378)||(36478140-36478202)
chr3 (289-382)||(25883936-25884029)
chr3 (291-382)||(3748550-3748641)
chr3 (298-378)||(46767381-46767461)
chr3 (316-378)||(27329884-27329946)
chr3 (316-382)||(40739159-40739225)
chr3 (316-378)||(41253701-41253763)
chr3 (316-378)||(41710639-41710701)
chr3 (316-378)||(51879151-51879213)
chr3 (316-382)||(53163650-53163716)
chr3 (316-385)||(32374895-32374964)
chr3 (286-330)||(30200849-30200893)
chr3 (286-382)||(55494712-55494807)
[»] chr2 (6 HSPs)
chr2 (269-382)||(10058877-10058991)
chr2 (316-385)||(14518340-14518409)
chr2 (347-382)||(32854619-32854654)
chr2 (316-382)||(1844873-1844939)
chr2 (294-382)||(13528660-13528748)
chr2 (481-552)||(28683514-28683585)
[»] chr5 (5 HSPs)
chr5 (294-382)||(5195093-5195181)
chr5 (286-361)||(27545120-27545195)
chr5 (478-552)||(30771797-30771871)
chr5 (316-378)||(3741010-3741072)
chr5 (347-383)||(18597495-18597531)
[»] chr8 (12 HSPs)
chr8 (316-382)||(5328515-5328581)
chr8 (294-372)||(14181300-14181378)
chr8 (316-378)||(36035131-36035193)
chr8 (316-378)||(37708747-37708809)
chr8 (286-330)||(8148421-8148465)
chr8 (316-378)||(31024350-31024412)
chr8 (316-382)||(34873142-34873208)
chr8 (316-378)||(44053392-44053454)
chr8 (269-382)||(13105100-13105213)
chr8 (316-385)||(34894425-34894494)
chr8 (286-382)||(2908040-2908135)
chr8 (500-552)||(45365340-45365391)
[»] chr6 (7 HSPs)
chr6 (316-377)||(32616440-32616501)
chr6 (269-327)||(331883-331941)
chr6 (316-382)||(33646891-33646957)
chr6 (493-562)||(17581135-17581203)
chr6 (298-382)||(2816928-2817012)
chr6 (286-330)||(15291684-15291728)
chr6 (481-552)||(21771134-21771205)
[»] chr1 (5 HSPs)
chr1 (301-382)||(49907321-49907402)
chr1 (298-382)||(28564293-28564377)
chr1 (316-382)||(17776896-17776962)
chr1 (312-382)||(49753465-49753535)
chr1 (481-552)||(31057563-31057634)
[»] scaffold0464 (1 HSPs)
scaffold0464 (334-382)||(5631-5679)
[»] chr7 (4 HSPs)
chr7 (286-326)||(46659393-46659433)
chr7 (289-324)||(18065881-18065916)
chr7 (316-385)||(1563684-1563753)
chr7 (481-552)||(351306-351377)


Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 106 - 663
Target Start/End: Complemental strand, 33039174 - 33038617
Alignment:
Q  106 aaacaattgactgttgtctatgtatgaaagacaaaaataaatggccttagcaaccgttgatatgggatatgagaagagcacttatttaatttgacatgaa 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33039174 aaacaaatgactgttgtctatgtatgaaagacaaaaataaatggccttagcaactgttgatatgggatatgagaagagcacttatttaatttgacatgaa 33039075  T
Q  206 caaaagtacgtgtaaaatatattggacataccacatattacttaattttgagcataaaagcatttaactcatgtggttgagacaatgtataatatatgca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33039074 caaaagtacgtgtaaaatatattggacataccacatattacttaattttgagcataaaagcatttaactcaggtggttgagacaatgtataatatatgca 33038975  T
Q  306 aggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataattgtcgaaatttggtcatgt 405  Q
     |||||| | ||||||||||||||||| ||||||| ||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||    
T  33038974 gggattggggttcgaacctcggacatcccacttctttgtgcttaaaatgtgtgatctccagccactagactacttgataattgtcgaaatttagtcatgt 33038875  T
Q  406 tatatgttagtggcgacaactgcgattgtctcattattgatgtaaaaataaaatttaaagataatataatttagatgcgcacctaaaaattatgatataa 505  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  33038874 tatacgttagtggcgacaactgcgattctctcattattgatgtaaaagtaaaatttaaatattatagaatttagatgcgcacctaaaaattatgatataa 33038775  T
Q  506 ttatcaagatatgttgctgaaagtgaaagattgttggaatattttatcatataattaattaatacattccaatattattatgtgtgcatgtgttttacaa 605  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  33038774 ttattaagatatgttgccgaaagtgaaagtttgttggaatattttatcatataattaattaatacattccaatactattatgtgtgcatatgttttacaa 33038675  T
Q  606 gttctatgaaaaggcatgctttcctatatgctacactgaaaaggcatgcacaggttct 663  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33038674 gttctatgaaaaggcatactttcctatatgctacactgaaaaggcatgcacgggttct 33038617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 33039233 - 33039160
Alignment:
Q  19 agataccatgatatcatgactcaaatttaaatgagaaatgtttaaatctaagtatcgtaaaacaattgactgtt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33039233 agataccatgatatcatgactcaaatttaaatgagaaatgtttaaatctaagtatcgtaaaacaaatgactgtt 33039160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 30305855 - 30305917
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| ||||||||||   | ||||||||||||||| ||||||||||||||||    
T  30305855 ttcgaaccccggacacctcacttctccacatttaaaatgtgtgagctccagccactaggctac 30305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 596 - 638
Target Start/End: Original strand, 33034984 - 33035026
Alignment:
Q  596 tgttttacaagttctatgaaaaggcatgctttcctatatgcta 638  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  33034984 tgttttacaagttctatgaaaaggcttgttttcctatatgcta 33035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 10402497 - 10402563
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||| |||||| ||||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  10402497 ttcgaaccccggacacctcacttctccacaattaaattgtgtgagctctagccactaggctacttga 10402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 23142736 - 23142698
Alignment:
Q  347 ttaaaatgtgtgagcaccagccactaggctacttgataa 385  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  23142736 ttaaaatgtgtgagctccagccactaggctacctgataa 23142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 36099197 - 36099135
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  36099197 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 36099135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 45304024 - 45303936
Alignment:
Q  289 aatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||| ||||||||||||||| ||||  |||||||| |||||| | ||||||||   | | ||||||||||||  ||||||||||||||||    
T  45304024 aatgcataatatatgcaagggttgaagttcgaacc-cggacaccccacttctccacattaaaaatgtgtgagttccagccactaggctac 45303936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 47929283 - 47929363
Alignment:
Q  298 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| || | ||| ||||||||||||| | | ||||||||   | ||||||||||||||| | ||||||||||||||    
T  47929283 tatatgcaggggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagctctagccactaggctac 47929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 15085698 - 15085636
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| ||||||||||  || ||||||||||||||| ||||||||||||||||    
T  15085698 ttcgaaccccggacacctcacttctccatatttaaaatgtgtgagctccagccactaggctac 15085636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 36478202 - 36478140
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    ||||||||||||||||||||||||||   | | ||||||||||||| ||||||||||||||||    
T  36478202 ttcgaacctcggacatctcacttctccacattaaaaatgtgtgagctccagccactaggctac 36478140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 25884029 - 25883936
Alignment:
Q  289 aatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||| |||||||||||| || | | | |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||||||    
T  25884029 aatgcataatatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacttga 25883936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 382
Target Start/End: Complemental strand, 3748641 - 3748550
Alignment:
Q  291 tgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||| |||||||| || ||| | |||||||| |||||||||||||||||   | || || ||||||||| | ||||||||||||||||||    
T  3748641 tgtatattatatgcaggggttggggttcgaaccccggacatctcacttctccacaatttaattgtgtgagctctagccactaggctacttga 3748550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 46767381 - 46767461
Alignment:
Q  298 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| ||  |||| ||| |||| |||||||| ||||||||   | ||||||||||||||| ||||||||||||||||    
T  46767381 tatatgcaggggctgaggttcaaaccccggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctac 46767461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 27329946 - 27329884
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  27329946 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 27329884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 40739225 - 40739159
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||| ||||||| ||||||||||  |  ||||||||||||||| | ||||||||| ||||||||    
T  40739225 ttcgaacttcggacacctcacttctccatgtttaaaatgtgtgagctctagccactagactacttga 40739159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 41253763 - 41253701
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| || ||| ||||||| ||  || ||||||||||||||| ||||||||||||||||    
T  41253763 ttcgaaccccgaacacctcacttttccatatttaaaatgtgtgagctccagccactaggctac 41253701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 41710639 - 41710701
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||| | |||||| ||||||||||   | ||||||||||||||| ||||||||||||||||    
T  41710639 ttcgaatcccggacacctcacttctccacatttaaaatgtgtgagctccagccactaggctac 41710701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 51879151 - 51879213
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  51879151 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 51879213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 53163650 - 53163716
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||| |||||| | |||||||| | | ||||| ||||||||| | ||||||||||||||||||    
T  53163650 ttcgaaccccggacaccccacttctccgcaattaaattgtgtgagctctagccactaggctacttga 53163716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 385
Target Start/End: Original strand, 32374895 - 32374964
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 385  Q
    |||||||||||||||   |||||| ||||| ||||| ||||||||| | || |||||||||| |||||||    
T  32374895 ttcgaacctcggacactccacttccctgtaattaaattgtgtgagctctagtcactaggctatttgataa 32374964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 30200849 - 30200893
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcggaca 330  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||    
T  30200849 gacaatgcataatatatgcaaggtttgaggttcgaaccccggaca 30200893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 382
Target Start/End: Original strand, 55494712 - 55494807
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||| |||||||||| ||||| || | ||||||||||  ||| | |||||||   || ||||||| ||||||| ||| ||||||||||||||||    
T  55494712 gacaatgcataatatatgtaaggactggggttcgaacctcatacacc-cacttcttcatatttaaaatatgtgagctccaaccactaggctacttga 55494807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 382
Target Start/End: Original strand, 10058877 - 10058991
Alignment:
Q  269 ttaactcatgtggttgagacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttct-ctgtacttaaaatgtgtgagcaccagc 367  Q
    ||||||||  |||| ||||||||| ||||||||||||| | | | | || ||||| |||||| ||||||| | || || ||||||||||| ||| |||||    
T  10058877 ttaactcaattggtagagacaatgcataatatatgcaaaggtcggggtttgaaccccggacaactcacttattctatatttaaaatgtgtaagctccagc 10058976  T
Q  368 cactaggctacttga 382  Q
    |||||||||||||||    
T  10058977 cactaggctacttga 10058991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 385
Target Start/End: Original strand, 14518340 - 14518409
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 385  Q
    ||||||||||| |||   ||||||||  || ||||||||||||||| |||||||||||||||| ||||||    
T  14518340 ttcgaacctcgaacactccacttctccatatttaaaatgtgtgagctccagccactaggctacctgataa 14518409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 32854619 - 32854654
Alignment:
Q  347 ttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32854619 ttaaaatgtgtgagctccagccactaggctacttga 32854654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 1844873 - 1844939
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||||||||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  1844873 ttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 1844939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 13528660 - 13528748
Alignment:
Q  294 ataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||||| | || |||||||||||||| | ||||||||||||||   || |||| |||||||||| | | |||| || ||||||||    
T  13528660 ataatatatgtaggggttgagattcgaaccccagacatctcacttctgcatatttaatatgtgtgagctctatccaccagactacttga 13528748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 552
Target Start/End: Complemental strand, 28683585 - 28683514
Alignment:
Q  481 tgcgcacctaaa-aattatgatataattatcaagatatgttgctgaaagtgaaagattgttggaatattttat 552  Q
    ||||| |||||| ||||||||||||||||| ||||||||| ||   |||||  ||||||||||||||||||||    
T  28683585 tgcgcgcctaaagaattatgatataattattaagatatgtagc-ccaagtgggagattgttggaatattttat 28683514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 5195181 - 5195093
Alignment:
Q  294 ataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||||| | || ||||| |||||||||| |||| ||||||||||| || ||||||||||||||  ||| | ||||| ||||||||    
T  5195181 ataatatatgtaggggttgaggttcgaacctcagacacctcacttctctatatttaaaatgtgtgagttccaactactagactacttga 5195093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 27545195 - 27545120
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagc 361  Q
    ||||||| ||||||||||||||| | ||| ||| || |||||||| |||||||||   || |||||||||||||||    
T  27545195 gacaatgcataatatatgcaagggtcgaggttcaaatctcggacacctcacttcttcatatttaaaatgtgtgagc 27545120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 30771797 - 30771871
Alignment:
Q  478 agatgcgcacctaaa-aattatgatataattatcaagatatgttgctgaaagtgaaagattgttggaatattttat 552  Q
    |||||||| |||||| |||| |||||||||||| ||||||||| ||  || |||| ||||||||||||||||||||    
T  30771797 agatgcgcgcctaaagaattgtgatataattattaagatatgtagcccaa-gtgagagattgttggaatattttat 30771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 3741010 - 3741072
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  3741010 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 3741072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 18597495 - 18597531
Alignment:
Q  347 ttaaaatgtgtgagcaccagccactaggctacttgat 383  Q
    ||||||||||||||| | |||||||||||||||||||    
T  18597495 ttaaaatgtgtgagctctagccactaggctacttgat 18597531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 5328581 - 5328515
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||| |||||| ||||||||||   | ||||||||||||||| | ||||||||||||||||||    
T  5328581 ttcgaaccccggacacctcacttctccacaattaaaatgtgtgagctctagccactaggctacttga 5328515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 14181378 - 14181300
Alignment:
Q  294 ataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccacta 372  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||||||| | | ||||||||| ||||| ||| ||||||    
T  14181378 ataatatatgcagaggttgggattcgaacctccgacatctcacttctccgcatttaaaatgtatgagctccaaccacta 14181300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 36035193 - 36035131
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    ||||||||||||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  36035193 ttcgaacctcggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 36035131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 37708747 - 37708809
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||||| ||||||||   | ||||||||||||||| ||||||||||||||||    
T  37708747 ttcgaaccccggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctac 37708809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 8148465 - 8148421
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcggaca 330  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  8148465 gacaatgtataatatatgcaaggtctaagattcgaacctcggaca 8148421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 31024350 - 31024412
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  31024350 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 31024412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 34873142 - 34873208
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||||||||||| | ||||||||   | ||||||||||||||| ||||||||||| ||| ||||    
T  34873142 ttcgaacctcggacaccccacttctccacatttaaaatgtgtgagctccagccactagactatttga 34873208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 44053454 - 44053392
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 378  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  44053454 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 44053392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 382
Target Start/End: Original strand, 13105100 - 13105213
Alignment:
Q  269 ttaactcatgtggttgagacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagcc 368  Q
    ||||||||  |||| | ||||||| |||||||||||||||   | | |||||||||| |||| | ||||||||   | ||||||||||||||| |||| |    
T  13105100 ttaactcagttggtagggacaatgcataatatatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagctccagtc 13105199  T
Q  369 actaggctacttga 382  Q
    | || |||||||||    
T  13105200 attatgctacttga 13105213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 385
Target Start/End: Original strand, 34894425 - 34894494
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 385  Q
    |||||||| |||||| | ||||||||   | ||||| ||||||||| | |||||||||||||||||||||    
T  34894425 ttcgaaccccggacaccccacttctccacagttaaattgtgtgagctctagccactaggctacttgataa 34894494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 2908135 - 2908040
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||| |||||||||||| ||   | | ||||||||  ||||| | |||||||| | | ||||||||||||||| | ||||||||||||||||||    
T  2908135 gacaatgcataatatatgcaggggccggggttcgaaccctggacaccccacttctccgca-ttaaaatgtgtgagctctagccactaggctacttga 2908040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 45365340 - 45365391
Alignment:
Q  500 atataattatcaagatatgttgctgaaagtgaaagattgttggaatattttat 552  Q
    |||||||||| |||||||||  || ||||||| ||||||||||||||||||||    
T  45365340 atataattataaagatatgtaact-aaagtgagagattgttggaatattttat 45365391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 32616440 - 32616501
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggcta 377  Q
    |||||| | |||||| | |||||||||| | ||||||||||||||| |||||||||||||||    
T  32616440 ttcgaatcccggacaccccacttctctgcatttaaaatgtgtgagctccagccactaggcta 32616501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 331941 - 331883
Alignment:
Q  269 ttaactcatgtggttgagacaatgtataatatatgcaaggattgagattcgaacctcgg 327  Q
    ||||||||  |||| ||||||||| ||||||||||||||| ||| ||||| ||||||||    
T  331941 ttaactcagttggtagagacaatgcataatatatgcaaggtttgggattcaaacctcgg 331883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 33646891 - 33646957
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||||||||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  33646891 ttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 33646957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 562
Target Start/End: Original strand, 17581135 - 17581203
Alignment:
Q  493 aattatgatataattatcaagatatgttgctgaaagtgaaagattgttggaatattttatcatataatta 562  Q
    ||||||||||||||||| ||||||||| ||   |||||  |||||||||||||||||||| || ||||||    
T  17581135 aattatgatataattattaagatatgtagc-ccaagtgggagattgttggaatattttattatttaatta 17581203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 2816928 - 2817012
Alignment:
Q  298 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||| ||  ||||||||||||  |||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  2816928 tatatgcaggggctgagattcgaactccggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 2817012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 15291728 - 15291684
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcggaca 330  Q
    ||||||| ||||||||||||||| ||||| ||||||| |||||||    
T  15291728 gacaatgaataatatatgcaaggtttgaggttcgaacttcggaca 15291684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 552
Target Start/End: Complemental strand, 21771205 - 21771134
Alignment:
Q  481 tgcgcacctaaa-aattatgatataattatcaagatatgttgctgaaagtgaaagattgttggaatattttat 552  Q
    ||||| |||||| |||| |||||||||||| ||||||||| ||  || |||| ||||||||||||||||||||    
T  21771205 tgcgcgcctaaataattttgatataattattaagatatgtagcccaa-gtgagagattgttggaatattttat 21771134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 382
Target Start/End: Original strand, 49907321 - 49907402
Alignment:
Q  301 atgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||| | ||| |||||||| ||||||||  | |||||  || ||||||||||||| | ||||||||||||||||||||    
T  49907321 atgcaagggtcgaggttcgaaccccggacatcctatttctccatatttaaaatgtgtgaactccagccactaggctacttga 49907402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 28564377 - 28564293
Alignment:
Q  298 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||| || ||| | ||||||||||||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  28564377 tatatgcaggggttggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 28564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 17776896 - 17776962
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||||||||||| |||||||||   | ||||| |||| |||| | ||||||||||||||||||    
T  17776896 ttcgaacctcggacatttcacttctccacaattaaattgtgcgagctctagccactaggctacttga 17776962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 49753535 - 49753465
Alignment:
Q  312 gagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    ||||||||||| ||||||||| ||||||| | || ||||| ||||||| | | |||||||||| |||||||    
T  49753535 gagattcgaacttcggacatcccacttctttataattaaattgtgtgaactctagccactaggttacttga 49753465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 552
Target Start/End: Original strand, 31057563 - 31057634
Alignment:
Q  481 tgcgcacctaaa-aattatgatataattatcaagatatgttgctgaaagtgaaagattgttggaatattttat 552  Q
    ||||| |||||| |||| |||||||||||| ||||||||| ||| || |||  ||||||||||||||||||||    
T  31057563 tgcgcgcctaaagaattttgatataattattaagatatgtagctcaa-gtgggagattgttggaatattttat 31057634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 5679 - 5631
Alignment:
Q  334 cacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 382  Q
    |||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  5679 cacttctctgtatttaaaatgtgtgagctctaaccactaggctacttga 5631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 46659433 - 46659393
Alignment:
Q  286 gacaatgtataatatatgcaaggattgagattcgaacctcg 326  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  46659433 gacaatgtataatatatgcaaggtttgagattcaaacctcg 46659393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 18065881 - 18065916
Alignment:
Q  289 aatgtataatatatgcaaggattgagattcgaacct 324  Q
    |||||||||||||||||||| |||||||||||||||    
T  18065881 aatgtataatatatgcaaggtttgagattcgaacct 18065916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 1563753 - 1563684
Alignment:
Q  316 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 385  Q
    |||||||| |||||| | |||||||||  | ||||| ||||||||| | | |||||||||||||||||||    
T  1563753 ttcgaaccccggacaccccacttctctacaattaaattgtgtgagctctaaccactaggctacttgataa 1563684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 552
Target Start/End: Original strand, 351306 - 351377
Alignment:
Q  481 tgcgcacctaaa-aattatgatataattatcaagatatgttgctgaaagtgaaagattgttggaatattttat 552  Q
    ||||| |||||| ||||||||||||||||| ||||||||| ||   |||||  ||||||||||||||||||||    
T  351306 tgcgcgcctaaagaattatgatataattattaagatatgtagc-ccaagtgggagattgttggaatattttat 351377  T

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