View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_6 (Length: 469)
Name: NF7587_low_6
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 31667386 - 31666946
Alignment:
| Q |
9 |
gaagaatatcaatatgtgtggaaaa-gaaattctctattaaatagtatgggagacagttgcacgaaattggatgacatgacaaaacatatgggtattgtg |
107 |
Q |
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| T |
31667386 |
gaagaaaatcaatatgtgtcgaaaaagaaattttctattaaatagtatgggagacgattgcacgaaattggatgacatgacaaaacatatgggtattggg |
31667287 |
T |
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| Q |
108 |
gtagtattggaaacaagtgatgggtatattagtaattatcaattcaaagtagtgccattattgtctttcgtatacatgtgtttgtaacatacaacattca |
207 |
Q |
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| T |
31667286 |
gttgtattggaaacaagtgatgggtatattagtaattatcaattcaaagta-tgcaattattgtctttcgtatacatgtgtttgtaaaatacaacattca |
31667188 |
T |
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| Q |
208 |
ctttctcattaattcaggtgtgactataacgtgctttactcnnnnnnnngttaattgtttgggttttaagaaaaggaacccaaagtctagccaataattg |
307 |
Q |
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| T |
31667187 |
ctttctcattaattcaggtgcgactataatgtgctttact-ttttttgtgttaattatccggtttttaagaaaagaaacccaaaatctagcaaataattg |
31667089 |
T |
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| Q |
308 |
ttttcacaaaaagactttttcaaacaattcgttatatgataaactcattaataacatgttttgctactacatctaagttttaaaaatttaagacatttgc |
407 |
Q |
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| T |
31667088 |
tttccactaaaagactttttcaaacggttcgttatatgagaaactcattaataacatgttttgctactacatctaagttttaaaaatttaagacatttgc |
31666989 |
T |
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| Q |
408 |
ttcaaaaacaaatcataaacaagatcagcaataggtgacaata |
450 |
Q |
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| T |
31666988 |
ttcaaaaacaaatcataaacaaaatcagcaataggtgataata |
31666946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 31666834 - 31666776
Alignment:
| Q |
394 |
tttaagacatttgcttcaaaaacaaatcataaacaagatcagcaataggtgacaataat |
452 |
Q |
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| T |
31666834 |
tttaagacatttgcttcaaaaacaaatcataaacaaaatcagcaataggtgacaataat |
31666776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 4888455 - 4888589
Alignment:
| Q |
48 |
aatagtatgggagacagttgcacgaaattggatgacatgacaaaacatatgggtattgtggtagtattggaaacaagtgatgggtatattagtaattatc |
147 |
Q |
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| T |
4888455 |
aatagtacgagagacagttgcacaaaattggacgacaatataaaacaaaaggggatt-tagtaatattgtaaacaagtgatgggtatattaataattata |
4888553 |
T |
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| Q |
148 |
aattcaaagtagtgccattattgtctttcgtataca |
183 |
Q |
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| T |
4888554 |
agtctaaagtagtgcaaatcttacctttcgtataca |
4888589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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