View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7587_low_7 (Length: 465)
Name: NF7587_low_7
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7587_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 210 - 452
Target Start/End: Complemental strand, 36468679 - 36468437
Alignment:
| Q |
210 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattgaacgaaagcaaaacaagtttatgaaaataagttaaatgagttagagttaaaatca |
309 |
Q |
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| T |
36468679 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattgaacgaaagcaaaacaagtttatgaaaataagttaaatgagttagagttaaaatca |
36468580 |
T |
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| Q |
310 |
ggttacaaacaaaatatttctaattcatttatatcgtgaaagagttgcacaagttgtttatattaaaaccattgaagataaataagggtttttggttttt |
409 |
Q |
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| T |
36468579 |
ggttacaaacaaaatatttctaattcatttatatcgtgaaagagttgcagaagttgtttatattaataccattgaagataaataagggtttttggttttt |
36468480 |
T |
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| Q |
410 |
cgtgtgtatattaggggagttagaatgttagaacttggaaatg |
452 |
Q |
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| T |
36468479 |
cgtgtgtatattaggggagttagaatgttagaacatggaaatg |
36468437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 36470338 - 36470228
Alignment:
| Q |
17 |
ctgtgagtacataagaactatttgttattagaaatcagataaggggagggaaaatgcaagggtggagtgtaatagtggacaggattgaggatagagaaga |
116 |
Q |
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| T |
36470338 |
ctgtgagtacataagcactatttattattagaaatcagataaggggagggaaaatgcaagggtggagtgtaatagtggacaggattgaggattgagaata |
36470239 |
T |
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| Q |
117 |
aaagattaaga |
127 |
Q |
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| T |
36470238 |
aaagattaaga |
36470228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 36470006 - 36469936
Alignment:
| Q |
123 |
taagatgctaaaatgtgtaaatgacgctcttatttaaaaagttggatgagcgagaaaggtatatttccttt |
193 |
Q |
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| T |
36470006 |
taagatgctaaaatgtgtaaatgacgctcttatttaaaaagttggctgagcgagaaagatatatttccttt |
36469936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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