View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7587_low_8 (Length: 456)

Name: NF7587_low_8
Description: NF7587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7587_low_8
NF7587_low_8
[»] chr7 (19 HSPs)
chr7 (331-438)||(7147650-7147757)
chr7 (1-93)||(7147947-7148036)
chr7 (2-93)||(7146918-7147009)
chr7 (203-257)||(7147783-7147837)
chr7 (337-438)||(22794109-22794212)
chr7 (331-438)||(29658384-29658493)
chr7 (6-80)||(19278496-19278570)
chr7 (331-406)||(29657228-29657305)
chr7 (6-93)||(22746206-22746293)
chr7 (331-437)||(4973822-4973933)
chr7 (339-407)||(29409042-29409110)
chr7 (5-93)||(46673631-46673719)
chr7 (378-438)||(40918101-40918162)
chr7 (9-92)||(22061682-22061765)
chr7 (6-49)||(22744889-22744932)
chr7 (6-53)||(35128118-35128165)
chr7 (10-93)||(43006532-43006615)
chr7 (6-93)||(22060606-22060694)
chr7 (371-407)||(32893709-32893745)
[»] chr3 (20 HSPs)
chr3 (351-438)||(36627170-36627257)
chr3 (1-93)||(36626881-36626973)
chr3 (2-81)||(36627926-36628005)
chr3 (331-419)||(14206572-14206659)
chr3 (331-419)||(14214320-14214407)
chr3 (203-257)||(36627074-36627128)
chr3 (9-93)||(41387319-41387403)
chr3 (2-93)||(41386269-41386360)
chr3 (2-93)||(42633772-42633863)
chr3 (10-92)||(2124176-2124258)
chr3 (6-93)||(10987538-10987626)
chr3 (2-93)||(42632845-42632936)
chr3 (6-80)||(54653865-54653939)
chr3 (6-88)||(43103187-43103269)
chr3 (369-421)||(47916421-47916473)
chr3 (6-53)||(10986774-10986821)
chr3 (364-421)||(54353305-54353361)
chr3 (364-420)||(41387189-41387245)
chr3 (6-90)||(43102037-43102121)
chr3 (331-363)||(48337974-48338006)
[»] scaffold0171 (1 HSPs)
scaffold0171 (354-438)||(29022-29107)
[»] chr5 (9 HSPs)
chr5 (331-438)||(14357652-14357760)
chr5 (335-438)||(30915720-30915825)
chr5 (331-422)||(14356674-14356767)
chr5 (35-93)||(19569512-19569570)
chr5 (6-90)||(26404099-26404183)
chr5 (335-407)||(30915920-30915992)
chr5 (337-421)||(33362372-33362456)
chr5 (369-420)||(26403964-26404015)
chr5 (2-86)||(26403446-26403530)
[»] chr8 (7 HSPs)
chr8 (331-421)||(42307714-42307805)
chr8 (14-93)||(38589971-38590050)
chr8 (6-96)||(4807509-4807599)
chr8 (331-438)||(11080800-11080910)
chr8 (14-93)||(27750507-27750586)
chr8 (2-52)||(41867843-41867893)
chr8 (16-92)||(43277808-43277884)
[»] scaffold0041 (3 HSPs)
scaffold0041 (331-420)||(913-1002)
scaffold0041 (372-421)||(835-884)
scaffold0041 (378-438)||(54933-54994)
[»] chr1 (18 HSPs)
chr1 (331-419)||(52439074-52439163)
chr1 (331-438)||(49619593-49619702)
chr1 (14-93)||(47136573-47136652)
chr1 (6-91)||(3978187-3978272)
chr1 (331-407)||(49618669-49618746)
chr1 (6-93)||(16217583-16217670)
chr1 (14-93)||(25787050-25787129)
chr1 (331-421)||(40778610-40778701)
chr1 (337-438)||(40779414-40779516)
chr1 (2-62)||(48467388-48467448)
chr1 (6-80)||(3979211-3979286)
chr1 (14-93)||(25786119-25786198)
chr1 (2-93)||(47411334-47411425)
chr1 (10-81)||(52181203-52181274)
chr1 (331-396)||(1822152-1822216)
chr1 (364-421)||(50483868-50483924)
chr1 (6-90)||(16218367-16218451)
chr1 (369-421)||(40187889-40187940)
[»] chr4 (15 HSPs)
chr4 (331-421)||(37642325-37642415)
chr4 (331-438)||(49922745-49922854)
chr4 (1-93)||(1273319-1273411)
chr4 (6-90)||(33377253-33377337)
chr4 (9-93)||(37559144-37559228)
chr4 (331-427)||(5548436-5548534)
chr4 (6-92)||(55953739-55953825)
chr4 (338-438)||(49923535-49923636)
chr4 (6-93)||(5688523-5688610)
chr4 (2-93)||(37560186-37560276)
chr4 (378-438)||(5547180-5547241)
chr4 (6-62)||(44128251-44128307)
chr4 (369-405)||(48481979-48482015)
chr4 (6-80)||(26788665-26788739)
chr4 (371-421)||(54373795-54373845)
[»] scaffold2127 (1 HSPs)
scaffold2127 (14-93)||(401-480)
[»] chr6 (7 HSPs)
chr6 (371-438)||(682535-682603)
chr6 (6-93)||(8412202-8412289)
chr6 (378-439)||(18498260-18498322)
chr6 (369-421)||(1756533-1756585)
chr6 (6-49)||(8411229-8411272)
chr6 (386-438)||(21455430-21455483)
chr6 (369-421)||(18499686-18499738)
[»] scaffold0034 (1 HSPs)
scaffold0034 (331-407)||(98275-98355)
[»] chr2 (4 HSPs)
chr2 (2-53)||(42027332-42027383)
chr2 (35-90)||(2581955-2582010)
chr2 (337-438)||(12365803-12365908)
chr2 (8-57)||(6208987-6209036)
[»] scaffold0065 (1 HSPs)
scaffold0065 (338-419)||(35598-35680)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 7147757 - 7147650
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaactttaaatct 430  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  7147757 tacaacattcatcaatcttcatcatcttcaactaattcttttctttaaaaaatttatcatttcaatttcaacaaaaatcacataatcaaactttaaatct 7147658  T
Q  431 acaattaa 438  Q
    ||||||||    
T  7147657 acaattaa 7147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7148036 - 7147947
Alignment:
Q  1 cctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||| |||||||||||||||||| |||||||||||    
T  7148036 cctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagca---atagcataccgtggactcacaacatatgataactt 7147947  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 7146918 - 7147009
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| |||| ||||| || ||| ||||| ||| |||||||    
T  7146918 ctcttttccacatgtcatttaagattgatgatgaacggttggatttaaaaagcacacatagcataccatgaacttacaacatataataactt 7147009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 7147837 - 7147783
Alignment:
Q  203 ttcaaaaatttattattgcaacttcatcaaaaataatataatcaccaacacctaa 257  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7147837 ttcaaaaatttattattgcaacttcatcaaaaacaatataatcaccaacacctaa 7147783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 22794212 - 22794109
Alignment:
Q  337 cttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaa 434  Q
    ||||||||||||| |||||||| ||||  || || |||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||| || ||    
T  22794212 cttcatcaatcttcatcatctttaacttttttttgttcttttaaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataa 22794113  T
Q  435 ttaa 438  Q
    ||||    
T  22794112 ttaa 22794109  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 29658493 - 29658384
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaact-ttaaat 428  Q
    ||||||||||| ||||||| |||||||||||||  || || |||||  ||||||| ||||||||||||||||||||||  ||||||||||||| |||||     
T  29658493 tacaaccttcaccaatctttatcatcttcaacttttttttcttcttccaaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaa 29658394  T
Q  429 ctacaattaa 438  Q
    ||| ||||||    
T  29658393 ctataattaa 29658384  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 19278496 - 19278570
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaa 80  Q
    ||||||||||||| |||| ||| ||||| ||||||||||||||||||| ||| |||  |||||||||||||||||    
T  19278496 tttccacatgtcagttaaaattcttgatcaacggttggatttaaaaagaacacataccataccgtggactcacaa 19278570  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 406
Target Start/End: Original strand, 29657228 - 29657305
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctttt--cttttaaaaatttatcatttcaacttcaacaaaa 406  Q
    ||||||||||||||||||| |||||||||||||  || ||||  |||| ||||||| |||||||||||||||||||||    
T  29657228 tacaaccttcatcaatcttcatcatcttcaactcttttttttttctttcaaaaattcatcatttcaacttcaacaaaa 29657305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 22746293 - 22746206
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||| ||||||||||||  |||| || ||||| |||||| ||| ||| |||| |||||||||||||||||| || ||||||||    
T  22746293 tttccacatatcatttaagattcgtgatcaatggttgaatttaagaagcacacatagcataccgtggactcacaacatacgataactt 22746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 437
Target Start/End: Complemental strand, 4973933 - 4973822
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt----ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac-ttta 425  Q
    ||||||||||||||||||| |||||||||||||  || ||    |||||| ||||||| ||||||||||||| ||||||||  ||| |||||||| ||||    
T  4973933 tacaaccttcatcaatcttcatcatcttcaactttttttttttgttctttcaaaaattcatcatttcaacttgaacaaaaaccacaaaatcaaacattta 4973834  T
Q  426 aatctacaatta 437  Q
    ||| || |||||    
T  4973833 aatttataatta 4973822  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 29409110 - 29409042
Alignment:
Q  339 tcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaa 407  Q
    ||||||||||| ||||||||||||   || |||||||| ||||||| ||||||| ||||||||||||||    
T  29409110 tcatcaatcttcatcatcttcaacctttttttttctttcaaaaattcatcattttaacttcaacaaaaa 29409042  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 46673631 - 46673719
Alignment:
Q  5 ttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||||||||||| ||||||||  |||| ||| |||||||||| |||| | | || | |||| ||||||||||||| |||||||||||    
T  46673631 ttttccacatgtcacttaagattgatgatcaacagttggatttataaagcatacatggcatactgtggactcacaacatatgataactt 46673719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 40918162 - 40918101
Alignment:
Q  378 aaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaa 438  Q
    ||||||| || |||||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  40918162 aaaaattcatgatttcaacttcaacaaaaaccacataatcaaacctttaaatctataattaa 40918101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 22061765 - 22061682
Alignment:
Q  9 ccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataact 92  Q
    |||| ||||||||||||||   ||| ||||||||||||||||||| ||| ||   ||| ||||||||| |||| ||||||||||    
T  22061765 ccacgtgtcatttaagattggggatcaacggttggatttaaaaagcacacatgacatatcgtggactcgcaacatatgataact 22061682  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 22744889 - 22744932
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaa 49  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  22744889 tttccacatgtcatttaagatttgtgatcaacggttggatttaa 22744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 35128165 - 35128118
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaag 53  Q
    ||||||| ||||||||||||||  |||| |||||||||||||||||||    
T  35128165 tttccacgtgtcatttaagattggtgatcaacggttggatttaaaaag 35128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 43006532 - 43006615
Alignment:
Q  10 cacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||||||  |||| ||| |||| |||||| ||| ||| |||| |||||||||||||  ||| || ||||||||    
T  43006532 cacatgtcatttaagattggtgatcaacagttgaatttaagaagcacacatagcataccgtggactctgaacataggataactt 43006615  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 22060606 - 22060694
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgt-ggactcacaacgtatgataactt 93  Q
    |||||||  |||||||||||||  |||| ||||||||||||||||||| ||| ||   |||||||  |||| ||||| |||||||||||    
T  22060606 tttccacgagtcatttaagattggtgatcaacggttggatttaaaaagcacacatgacataccgtatgacttacaacatatgataactt 22060694  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 32893709 - 32893745
Alignment:
Q  371 ttcttttaaaaatttatcatttcaacttcaacaaaaa 407  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  32893709 ttctttaaaaaattcatcatttcaacttcaacaaaaa 32893745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 36627170 - 36627257
Alignment:
Q  351 atcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaactttaaatctacaattaa 438  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36627170 atcatcttcaactaattcttttctttcaaaaatttatcatttcaacttcaacaaaaatcacataatcaaactttaaatctacaattaa 36627257  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36626881 - 36626973
Alignment:
Q  1 cctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||    
T  36626881 cctcttttccacatgtcatttaagattattgatgaacggttgaatttaaaaagcacagatagcataccgtggactcacaacatatgataactt 36626973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 36628005 - 36627926
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaac 81  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  36628005 ctcttttctacatgtcatttaagattgatgatgaacggttggatttaaaaagcacacatagcataccgtggactcacaac 36627926  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 14206659 - 14206572
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaa 419  Q
    ||||||||||||||||||| |||||||||||||  || | |||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  14206659 tacaaccttcatcaatcttcatcatcttcaacttttt-tgttctttaaaaaatttatcatttcaacttcaataaaaatcacataatcaa 14206572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 14214407 - 14214320
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaa 419  Q
    ||||||||||||||||||| |||||||||||||  || | |||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  14214407 tacaaccttcatcaatcttcatcatcttcaacttttt-tgttctttaaaaaatttatcatttcaacttcaataaaaatcacataatcaa 14214320  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 36627074 - 36627128
Alignment:
Q  203 ttcaaaaatttattattgcaacttcatcaaaaataatataatcaccaacacctaa 257  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  36627074 ttcaaaaatttattattgcaacttcatcaaaaacaatataatcacccacacctaa 36627128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 41387403 - 41387319
Alignment:
Q  9 ccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||| |||  |||| ||||||||||||||||||| |||  | | |||||||||||||||||| |||||||||||    
T  41387403 ccacatgtcatttaaaattggtgatcaacggttggatttaaaaagcacacttggcataccgtggactcacaacatatgataactt 41387319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 41386269 - 41386360
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||| ||||||||||||||| |||  | || ||||||||||||||||||  ||| || | ||||||||||||||||| ||||||||||||    
T  41386269 ctctttgccacatgtcatttaatattggtaatcaacggttggatttaaaaaacacacatggcataccgtggactcacaatgtatgataactt 41386360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 42633863 - 42633772
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||| |||||||||||||||||||  | || ||||||||||||||||||| ||| |||| ||||| ||| |||||||| ||| |||||||    
T  42633863 ctctttgccacatgtcatttaagattggtaatcaacggttggatttaaaaagcacacatagcataccatgggctcacaacatataataactt 42633772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 2124176 - 2124258
Alignment:
Q  10 cacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataact 92  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||| ||   ||| |||||| ||||||| ||||||||||    
T  2124176 cacatgtcatttaagattagtgatcaacggttggatttaaaaagcacacatgacatatcgtggattcacaacatatgataact 2124258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 10987626 - 10987538
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggattta-aaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||| ||||||||| |||| |||||||||||||| ||||| ||| || | |||| ||||||||||||| || ||||||||    
T  10987626 tttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatggcatacagtggactcacaacataggataactt 10987538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 42632845 - 42632936
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||| |||| ||||||||||||||  |||| |||||||||||||||||||     ||  ||||||||||||||||||| |||||||||||    
T  42632845 ctctttgccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcctgcatgatataccgtggactcacaacatatgataactt 42632936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 54653939 - 54653865
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaa 80  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||||| ||| ||   |||| ||||||||||||    
T  54653939 tttccacatgtcagttaagattcttgatcaacggttggatttaaaaagaacacatgccatactgtggactcacaa 54653865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 43103269 - 43103187
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgat 88  Q
    ||||||||||||| |||||||| |||||  |||||||||||||||||| ||| |||  |||  |||||||| |||| ||||||    
T  43103269 tttccacatgtcagttaagattcttgatcgacggttggatttaaaaagcacacataacatattgtggactcccaacatatgat 43103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 47916421 - 47916473
Alignment:
Q  369 ttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||||||| |||||| ||||||||||||||||||||| |  ||||||||||||    
T  47916421 ttttctttaaaaaatctatcatttcaacttcaacaaatacaacataatcaaac 47916473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 10986774 - 10986821
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaag 53  Q
    ||||||||||||| ||||||||| |||| |||||||| ||||||||||    
T  10986774 tttccacatgtcagttaagattaatgatcaacggttgaatttaaaaag 10986821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 54353305 - 54353361
Alignment:
Q  364 aattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||| |||||||| ||||||| ||||||||||||||||||||||  ||||||| ||||    
T  54353305 aatttttttctttcaaaaatt-atcatttcaacttcaacaaaaaccacataattaaac 54353361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 41387245 - 41387189
Alignment:
Q  364 aattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa 420  Q
    |||| ||| |||| ||||||| ||||||||||||||| ||||||| | |||||||||    
T  41387245 aattttttcctttaaaaaattcatcatttcaacttcatcaaaaatcatataatcaaa 41387189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 43102037 - 43102121
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataa 90  Q
    ||||||| || || ||||| || ||||| ||||| |  |||||||||| ||| |||| |||||||||||||||||| || |||||    
T  43102037 tttccacgtgccagttaaggttcttgatcaacggataaatttaaaaagcacacatagcataccgtggactcacaacatacgataa 43102121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 48338006 - 48337974
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaact 363  Q
    ||||||||||||||||||| |||||||||||||    
T  48338006 tacaaccttcatcaatcttcatcatcttcaact 48337974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 29107 - 29022
Alignment:
Q  354 atcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaa 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  29107 atcttcaactaatttttttctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatctacaattaa 29022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 14357760 - 14357652
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac-tttaaatc 429  Q
    ||||||||||||||||||| |||||||||||||  || ||| |||||||||||| ||||||||||||||||||||| | ||| |||||||| |||||||     
T  14357760 tacaaccttcatcaatcttcatcatcttcaactctttttttacttttaaaaattcatcatttcaacttcaacaaaattcacaaaatcaaacatttaaatt 14357661  T
Q  430 tacaattaa 438  Q
    || ||||||    
T  14357660 tataattaa 14357652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 30915720 - 30915825
Alignment:
Q  335 accttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctac 432  Q
    ||||||||||||||| ||||||||||  |  || || |||||| ||||||| ||||||||||||||||||||||  ||||||||||| |||||||| ||     
T  30915720 accttcatcaatcttcatcatcttcattttttttttgttctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttat 30915819  T
Q  433 aattaa 438  Q
    ||||||    
T  30915820 aattaa 30915825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 14356674 - 14356767
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttt--tcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaact 422  Q
    ||||||||||||||||||| | |||||||||||  || |||  ||||  ||||||| ||||||| ||||||||||||||  |||||||||||||    
T  14356674 tacaaccttcatcaatctttaccatcttcaactttttttttcttcttccaaaaattcatcattttaacttcaacaaaaaccacataatcaaact 14356767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 19569570 - 19569512
Alignment:
Q  35 aacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||||||| ||| || | |||||||||||||||||| |||||||||||    
T  19569570 aacggttggatttaaaaagaacacatggcataccgtggactcacaacatatgataactt 19569512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 26404183 - 26404099
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataa 90  Q
    ||||||| ||||||||||||||  |||| |||| ||||||||||||| |||| || | |||||||||||||| |||  |||||||    
T  26404183 tttccacgtgtcatttaagattgatgatcaacgtttggatttaaaaaatacacatggcataccgtggactcataacacatgataa 26404099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 30915992 - 30915920
Alignment:
Q  335 accttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaa 407  Q
    ||||||||||||||| ||||||||||  |  || | |||||| ||||||| ||||||||||||||||||||||    
T  30915992 accttcatcaatcttcatcatcttcatttttttttgttctttcaaaaattcatcatttcaacttcaacaaaaa 30915920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 33362456 - 33362372
Alignment:
Q  337 cttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||||||||| || | ||||||||| |  || | |||||| ||||||| ||||||||||||||||||||||  ||||||||||||    
T  33362456 cttcatcaattttcaccatcttcaattttttttgttctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 33362372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 26404015 - 26403964
Alignment:
Q  369 ttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa 420  Q
    ||||| |||||||||| ||||||||||||||| ||||||| | |||||||||    
T  26404015 ttttcatttaaaaattcatcatttcaacttcatcaaaaatcatataatcaaa 26403964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 26403446 - 26403530
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatg 86  Q
    |||||||||||||||||||||| |||  |||| || ||||| |||||||||  ||| ||   |||||||||||| ||||| ||||    
T  26403446 ctcttttccacatgtcatttaaaattgatgatcaatggttgaatttaaaaaacacacatgacataccgtggacttacaacatatg 26403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 42307714 - 42307805
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    ||||||||||||||||||| |||||||||||||  || || |||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  42307714 tacaaccttcatcaatcttcatcatcttcaacttttttttgttcttttaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 42307805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 38589971 - 38590050
Alignment:
Q  14 tgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||  |||| |||||||| |||||||||| ||| || | |||||||||||||||||| |||||||||||    
T  38589971 tgtcatttaagattggtgatcaacggttgaatttaaaaagcacacatggcataccgtggactcacaacatatgataactt 38590050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 4807509 - 4807599
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataacttata 96  Q
    |||||||||||||||| |||||  |||| ||||||||||||||||| | ||| ||   |||||||||||||||||  ||||||||||||||    
T  4807509 tttccacatgtcatttgagattggtgatcaacggttggatttaaaaggcacacatgtcataccgtggactcacaatatatgataacttata 4807599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 11080910 - 11080800
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttt--tcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaa 427  Q
    ||||||||||||||||||| ||||||||||     || |||  ||||| ||||||| ||||||||||||||||||||||  ||||||||||| |||||||    
T  11080910 tacaaccttcatcaatcttcatcatcttcattgttttttttgttctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaa 11080811  T
Q  428 tctacaattaa 438  Q
    | || ||||||    
T  11080810 tttataattaa 11080800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 27750586 - 27750507
Alignment:
Q  14 tgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||| ||||||||  |||| ||||||||||||||||||| ||| ||   |||||||||||||||||| |||||||||||    
T  27750586 tgtcagttaagattggtgatcaacggttggatttaaaaagcacacatgacataccgtggactcacaacatatgataactt 27750507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 41867893 - 41867843
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaa 52  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  41867893 ctcttttccacatgtcagttaagattagtgatcaacggttggatttaaaaa 41867843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 43277884 - 43277808
Alignment:
Q  16 tcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataact 92  Q
    ||||||||||||  |||| |||||||| |||||||||| ||| || | ||||||||| |||| ||| ||| ||||||    
T  43277884 tcatttaagattgatgatcaacggttgaatttaaaaagcacacatggcataccgtgggctcagaacatataataact 43277808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 1002 - 913
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa 420  Q
    |||||| |||||||||||| ||| |||||||||  || |||||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  1002 tacaacattcatcaatcttcatcttcttcaacttttttttttctttaaaaaattaatcatttcaacttcaacaaaaatcacataatcaaa 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 835 - 884
Alignment:
Q  372 tcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    ||||| ||||||| ||| ||||||||||||||||||| ||||||||||||    
T  835 tctttaaaaaattaatcttttcaacttcaacaaaaataacataatcaaac 884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 54933 - 54994
Alignment:
Q  378 aaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaa 438  Q
    ||||||| || |||||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  54933 aaaaattcatgatttcaacttcaacaaaaaccacataatcaaacctttaaatctataattaa 54994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 52439163 - 52439074
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaa 419  Q
    ||||||||||||||||||| |||||||||||||  || || |||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  52439163 tacaaccttcatcaatcttcatcatcttcaacttttttttgttctttaaaaaatttatcatttcaacttcaataaaaatcacataatcaa 52439074  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 49619702 - 49619593
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac-tttaaat 428  Q
    ||||||||||||||||||| |||||||||||||  || || |||||| ||||||| ||||||||||||||||||||||  ||| |||||||| |||||||    
T  49619702 tacaaccttcatcaatcttcatcatcttcaacttttttttgttctttcaaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaacatttaaat 49619603  T
Q  429 ctacaattaa 438  Q
     || ||||||    
T  49619602 ttagaattaa 49619593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 47136652 - 47136573
Alignment:
Q  14 tgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||| ||||||||  ||||||||||||||||||| |||| ||| || | |||||||||||||||||| |||||||||||    
T  47136652 tgtcacttaagattgatgatgaacggttggatttataaagcacacatggcataccgtggactcacaacatatgataactt 47136573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 3978187 - 3978272
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataac 91  Q
    |||| |||||||| |||||||| ||||| || |||||||||||||||| ||| ||   |||||||||||||||||| |||||||||    
T  3978187 tttctacatgtcagttaagattcttgatcaatggttggatttaaaaagaacacatgccataccgtggactcacaacatatgataac 3978272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 407
Target Start/End: Original strand, 49618669 - 49618746
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaa 407  Q
    ||||||||||||||||||| |||||||||||||  || || |||||  ||||||| ||||||||||||||||||||||    
T  49618669 tacaaccttcatcaatcttcatcatcttcaacttttttttgttcttccaaaaattcatcatttcaacttcaacaaaaa 49618746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 16217583 - 16217670
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||| ||||||||||||||   ||| ||||||| ||||||||||| ||| || | |||||||||||||||||||||  |||||||    
T  16217583 tttccacgtgtcatttaagattggcgatcaacggttagatttaaaaagcacacatggcataccgtggactcacaacgtaccataactt 16217670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 25787129 - 25787050
Alignment:
Q  14 tgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||  |||| |||||||||||||||||||  |  ||  ||||||||||||||||||| |||||||||||    
T  25787129 tgtcatttaagattggtgatcaacggttggatttaaaaagcccgcatgatataccgtggactcacaacatatgataactt 25787050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 40778610 - 40778701
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    ||||||||| ||||||||| |||||||||||||  || || |||||| ||||||| ||||||||||||||| ||||||  ||| ||||||||    
T  40778610 tacaacctttatcaatcttcatcatcttcaacttttttttgttctttaaaaaattcatcatttcaacttcagcaaaaaccacaaaatcaaac 40778701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 40779516 - 40779414
Alignment:
Q  337 cttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaat 435  Q
    ||||||||||||| |||| ||||||||  || | |||||  ||||||| ||||||||||||||||||||||  ||| |||||||| ||||||| || |||    
T  40779516 cttcatcaatcttcatcagcttcaactttttttgttcttccaaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaacatttaaatttataat 40779417  T
Q  436 taa 438  Q
    |||    
T  40779416 taa 40779414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 48467388 - 48467448
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatag 62  Q
    ||||||||||||||||||||||||||  |||||| |||||| |||||||||| | ||||||    
T  48467388 ctcttttccacatgtcatttaagattgatgatgagcggttgaatttaaaaagcagagatag 48467448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 3979286 - 3979211
Alignment:
Q  6 tttccacatgtcatttaagattatt-gatgaacggttggatttaaaaagtacagatagtataccgtggactcacaa 80  Q
    ||||||||||||| |||||||| || ||| ||||||||||||||||||| ||| ||   |||||||||||||||||    
T  3979286 tttccacatgtcacttaagattctttgatcaacggttggatttaaaaagaacacatgccataccgtggactcacaa 3979211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 25786119 - 25786198
Alignment:
Q  14 tgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||  |||| ||||||||||||||||||| ||| ||   ||||| |||||||||||| ||| |||||||    
T  25786119 tgtcatttaagattggtgatcaacggttggatttaaaaagcacacatgacataccatggactcacaacatataataactt 25786198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 47411425 - 47411334
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||| |||||||||||||||||||  |||| |||||||| |||||||||| ||| ||   ||| |||||||||||||  || ||||||||    
T  47411425 ctctttgccacatgtcatttaagattggtgatcaacggttgaatttaaaaagcacacatgacatatcgtggactcacaagatacgataactt 47411334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 52181274 - 52181203
Alignment:
Q  10 cacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaac 81  Q
    ||||||||||||||||||  |||| ||||||||||||||||||| ||| ||   |||||||| |||||||||    
T  52181274 cacatgtcatttaagattggtgatcaacggttggatttaaaaagcacacatgacataccgtgaactcacaac 52181203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 1822152 - 1822216
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaac 396  Q
    ||||||||||||||| ||| |||||||||||||  || |||||||| |||||| ||||||||||||    
T  1822152 tacaaccttcatcaa-cttcatcatcttcaacttttttttttctttcaaaaatctatcatttcaac 1822216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 50483868 - 50483924
Alignment:
Q  364 aattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||| |||||||||||||||| ||||||||||||||||||||||  ||||||| ||||    
T  50483868 aatttttttcttttaaaaatt-atcatttcaacttcaacaaaaaccacataattaaac 50483924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 16218451 - 16218367
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataa 90  Q
    |||||| ||||||||||| |||  |||| |||||||| |||||||||| |||  |   ||||||| |||||||||| ||||||||    
T  16218451 tttccatatgtcatttaaaattggtgatcaacggttgaatttaaaaagcacacgtgacataccgtagactcacaacatatgataa 16218367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 40187889 - 40187940
Alignment:
Q  369 ttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||||||| ||||||| ||||||||||||||||||||||  ||||||| ||||    
T  40187889 ttttctttcaaaaatt-atcatttcaacttcaacaaaaaccacataattaaac 40187940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 37642415 - 37642325
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    ||||||||||||||||||| ||||||||||  |  || | |||||| ||||||| ||||||||||||||||||||||  ||||||||||||    
T  37642415 tacaaccttcatcaatcttcatcatcttcatttttttttgttctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 37642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 438
Target Start/End: Original strand, 49922745 - 49922854
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac-tttaaat 428  Q
    ||||||||||||||||||| |||||||||||||  || || |||||| ||||||| ||||||| || ||||||||||| |||| |||||||| |||||||    
T  49922745 tacaaccttcatcaatcttcatcatcttcaacttttttttgttctttcaaaaattcatcattttaatttcaacaaaaactacaaaatcaaacatttaaat 49922844  T
Q  429 ctacaattaa 438  Q
     || ||||||    
T  49922845 ttataattaa 49922854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1273411 - 1273319
Alignment:
Q  1 cctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||| ||||||| ||||||||||||||  |||| ||||||||||||||||||| ||| || | ||||||||| |||||||| || ||||||||    
T  1273411 cctcatttccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacacatggcataccgtggtctcacaacataggataactt 1273319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 33377337 - 33377253
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataa 90  Q
    ||||||| |||| |||||||||  |||| ||||||||||||||||||| ||| || | |||||||||||||||||| ||||||||    
T  33377337 tttccacgtgtcgtttaagattggtgatcaacggttggatttaaaaagcacacatggcataccgtggactcacaacatatgataa 33377253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 37559144 - 37559228
Alignment:
Q  9 ccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||||||| |||| |||  |||| ||||||||||||||||||| ||| || | |||||||||||||||||| |||||||||||    
T  37559144 ccacatgtcacttaaaattggtgatcaacggttggatttaaaaagcacacatggcataccgtggactcacaacatatgataactt 37559228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 5548534 - 5548436
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattcttt--tcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaactttaaa 427  Q
    ||||||||| ||||||||| |||||||||||||  || |||  |||| | |||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  5548534 tacaaccttaatcaatcttcatcatcttcaactttttttttgttcttctcaaaattcatcattttaacttcaacaaaaatcacataatcaaactctaaa 5548436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 55953825 - 55953739
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataact 92  Q
    ||||||| ||||||||||||||  |||| |||||||| |||||||||| ||| || | ||||||||| |||||||| ||||||||||    
T  55953825 tttccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacacatggcataccgtgggctcacaacatatgataact 55953739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 438
Target Start/End: Complemental strand, 49923636 - 49923535
Alignment:
Q  338 ttcatcaatcttaatcatcttcaactaattcttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaatt 436  Q
    |||||||||||| |||||||||||||  || | |||||| ||||||| |||||||| |||||||||||||  ||| |||||||| ||||||| || ||||    
T  49923636 ttcatcaatcttcatcatcttcaactttttttgttctttaaaaaattcatcatttctacttcaacaaaaaccacaaaatcaaacatttaaatttaaaatt 49923537  T
Q  437 aa 438  Q
    ||    
T  49923536 aa 49923535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 5688610 - 5688523
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||| ||||| ||||||||  |||| |||||||||||||| |||| ||| || | |||| ||||||||||||| |||||||||||    
T  5688610 tttccacgtgtcacttaagattgatgatcaacggttggatttataaagcacacatggcatactgtggactcacaacatatgataactt 5688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 37560276 - 37560186
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    |||||| |||||||||||| || |||  |||| || |||||||||||||||  ||| || | ||||||||||||||||||||||||||||||    
T  37560276 ctctttgccacatgtcatt-aatattggtgatcaatggttggatttaaaaaacacacatggcataccgtggactcacaacgtatgataactt 37560186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 5547180 - 5547241
Alignment:
Q  378 aaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaa 438  Q
    ||||||| ||||||||||||||||||||||  ||||||||||| |||||||| || ||||||    
T  5547180 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaa 5547241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 44128307 - 44128251
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatag 62  Q
    ||||||||||||||| ||||||  |||| ||||||||||||||||||| ||| ||||    
T  44128307 tttccacatgtcattcaagattggtgatcaacggttggatttaaaaagcacacatag 44128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 48482015 - 48481979
Alignment:
Q  369 ttttcttttaaaaatttatcatttcaacttcaacaaa 405  Q
    |||||||||||||||| ||||||||||||||||||||    
T  48482015 ttttcttttaaaaattcatcatttcaacttcaacaaa 48481979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 26788665 - 26788739
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaa 80  Q
    ||||||| ||||| ||||||||  |||| |||||||| |||||||||| ||| ||   |||||||||||||||||    
T  26788665 tttccacgtgtcagttaagattggtgatcaacggttgaatttaaaaagcacacatgacataccgtggactcacaa 26788739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 54373845 - 54373795
Alignment:
Q  371 ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||||| ||||||| ||||||||||||||||||||||  ||| ||||||||    
T  54373845 ttctttaaaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaac 54373795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 480 - 401
Alignment:
Q  14 tgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||| ||||||||  ||||||||||||||||||| |||| ||| || | |||||||||||||||||| |||||||||||    
T  480 tgtcacttaagattgatgatgaacggttggatttataaagcacacatggcataccgtggactcacaacatatgataactt 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 682535 - 682603
Alignment:
Q  371 ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaa 438  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||| || ||||||    
T  682535 ttcttttaaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaa 682603  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 8412289 - 8412202
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataactt 93  Q
    ||||||||||||||||||||||  |||| || ||||| |||||| ||| ||| |||| ||||||| |||||||||| || ||||||||    
T  8412289 tttccacatgtcatttaagattcgtgatcaatggttgaatttaagaagcacacatagcataccgtagactcacaacatacgataactt 8412202  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 18498260 - 18498322
Alignment:
Q  378 aaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaat 439  Q
    ||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||    
T  18498260 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatctagaattaat 18498322  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 1756533 - 1756585
Alignment:
Q  369 ttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||||||| ||||||||||||||||||||| ||||||||  ||||||| ||||    
T  1756533 ttttctttcaaaaatttatcatttcaactttaacaaaaaccacataattaaac 1756585  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 8411229 - 8411272
Alignment:
Q  6 tttccacatgtcatttaagattattgatgaacggttggatttaa 49  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  8411229 tttccacatgtcatttaagatttgtgatcaacggttggatttaa 8411272  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 21455430 - 21455483
Alignment:
Q  386 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaa 438  Q
    |||||| |||||||||||| || |||||||||||||| ||||||||| ||||||    
T  21455430 atcattccaacttcaacaataactacataatcaaactcttaaatctagaattaa 21455483  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 18499738 - 18499686
Alignment:
Q  369 ttttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaac 421  Q
    |||||||| ||||||  |||||||||| |||||||||||  ||||||||||||    
T  18499738 ttttctttcaaaaatccatcatttcaaattcaacaaaaaccacataatcaaac 18499686  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 407
Target Start/End: Original strand, 98275 - 98355
Alignment:
Q  331 tacaaccttcatcaatcttaatcatcttcaactaattctt----ttcttttaaaaatttatcatttcaacttcaacaaaaa 407  Q
    ||||||||||||||||||| |||||||||||| | || ||    |||||| ||||||| ||||||||||||||||||||||    
T  98275 tacaaccttcatcaatcttcatcatcttcaacaacttttttttattctttcaaaaattcatcatttcaacttcaacaaaaa 98355  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 42027332 - 42027383
Alignment:
Q  2 ctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaag 53  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  42027332 ctcttttccacatgtcagttaagattcttgatcaacggttggatttaaaaag 42027383  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 2581955 - 2582010
Alignment:
Q  35 aacggttggatttaaaaagtacagatagtataccgtggactcacaacgtatgataa 90  Q
    ||||||||||||||||||| ||| || | |||||||||||||||||| ||||||||    
T  2581955 aacggttggatttaaaaagcacacatgggataccgtggactcacaacatatgataa 2582010  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 12365908 - 12365803
Alignment:
Q  337 cttcatcaatcttaatcatcttcaactaattctt---ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctac 432  Q
    ||||||||||||| |||||||||||||  || ||   |||||| ||||||| ||||||  ||||||||||||||  | ||||||||| |||||||| ||     
T  12365908 cttcatcaatcttcatcatcttcaacttttttttttgttctttcaaaaattgatcattaaaacttcaacaaaaaccatataatcaaacctttaaatttat 12365809  T
Q  433 aattaa 438  Q
    ||||||    
T  12365808 aattaa 12365803  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 6209036 - 6208987
Alignment:
Q  8 tccacatgtcatttaagattattgatgaacggttggatttaaaaagtaca 57  Q
    ||||||||||||||||||||  |||| || |||| |||||||||||||||    
T  6209036 tccacatgtcatttaagattggtgatcaagggttagatttaaaaagtaca 6208987  T

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Target: scaffold0065 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 35598 - 35680
Alignment:
Q  338 ttcatcaatcttaatcatcttcaactaattctt-ttcttttaaaaatttatcatttcaacttcaacaaaaattacataatcaa 419  Q
    |||||||||||| |||||||||||||  || || || ||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  35598 ttcatcaatcttcatcatcttcaacttttttttgttatttcaaaaatccatcatttcaacttcaacaaaaatcacataatcaa 35680  T

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