View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7588_low_3 (Length: 251)

Name: NF7588_low_3
Description: NF7588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7588_low_3
NF7588_low_3
[»] chr2 (5 HSPs)
chr2 (157-212)||(6913979-6914034)
chr2 (99-143)||(21425239-21425283)
chr2 (99-143)||(33716630-33716674)
chr2 (99-143)||(490069-490113)
chr2 (99-143)||(44068076-44068120)
[»] chr1 (8 HSPs)
chr1 (99-143)||(49739170-49739214)
chr1 (99-143)||(33234390-33234434)
chr1 (99-143)||(20280249-20280293)
chr1 (99-143)||(41550482-41550526)
chr1 (1-32)||(31016105-31016136)
chr1 (1-32)||(31890316-31890347)
chr1 (1-32)||(41550384-41550415)
chr1 (99-131)||(33771979-33772011)
[»] chr4 (6 HSPs)
chr4 (100-143)||(54505903-54505946)
chr4 (1-32)||(23639473-23639504)
chr4 (1-32)||(27635877-27635908)
chr4 (1-32)||(45754519-45754550)
chr4 (1-32)||(46633841-46633872)
chr4 (99-143)||(33612550-33612594)
[»] chr5 (7 HSPs)
chr5 (99-143)||(32624203-32624247)
chr5 (99-143)||(37963320-37963364)
chr5 (1-32)||(2148364-2148395)
chr5 (1-32)||(13589102-13589133)
chr5 (1-32)||(23189305-23189336)
chr5 (101-143)||(13589202-13589244)
chr5 (101-143)||(22798408-22798450)
[»] chr8 (4 HSPs)
chr8 (99-143)||(3052826-3052870)
chr8 (99-143)||(29039948-29039992)
chr8 (1-32)||(37404840-37404871)
chr8 (99-134)||(41572044-41572079)
[»] chr3 (3 HSPs)
chr3 (99-143)||(26409955-26409999)
chr3 (101-143)||(44500453-44500495)
chr3 (101-143)||(50465498-50465540)
[»] chr7 (3 HSPs)
chr7 (1-32)||(39444103-39444134)
chr7 (99-143)||(7574450-7574494)
chr7 (99-143)||(18922603-18922647)
[»] chr6 (1 HSPs)
chr6 (103-143)||(24025557-24025597)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 6913979 - 6914034
Alignment:
Q  157 atatgggtttagggttttaggttcgtgaactgagccccttccaccatgcaacgctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6913979 atatgggtttagggttttaggttcgtgaactgagccccttccaccatgcaacgctt 6914034  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 21425283 - 21425239
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  21425283 taatttattattaatttaacgaattggtgtaccgatacacccaaa 21425239  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 33716630 - 33716674
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||    
T  33716630 taatttattattagtttaacaaattggtgtaccgatacacccaaa 33716674  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 490069 - 490113
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||    
T  490069 taatttattattaattttacgacttggtgtaccgatacacccaaa 490113  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 44068120 - 44068076
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||  ||||||| ||||||| ||||||||    
T  44068120 taatttattattaatttaatgaattggtataccgatacacccaaa 44068076  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 49739214 - 49739170
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  49739214 taatttattattaatttaacaaattggtgtaccgatacacccaaa 49739170  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 33234390 - 33234434
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  33234390 taatttattattaatttaataaattggtgtaccgatacacccaaa 33234434  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 20280293 - 20280249
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||    
T  20280293 taatttattattaatttaatgaattggtgtaccgatacacccaaa 20280249  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 41550482 - 41550526
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||    
T  41550482 taatttattattaatttaataaattggtataccgatacacccaaa 41550526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31016105 - 31016136
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  31016105 aaaattaaattttatttcgtcgaagtttttgg 31016136  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31890316 - 31890347
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  31890316 aaaattaaattttatttcgtcgaagtttttgg 31890347  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41550384 - 41550415
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  41550384 aaaattaaattttatttcgtcgaagtttttgg 41550415  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 33771979 - 33772011
Alignment:
Q  99 taatttattattaatttaacaaattggtgtacc 131  Q
    |||||||||||||||||||| ||||||||||||    
T  33771979 taatttattattaatttaacgaattggtgtacc 33772011  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 54505903 - 54505946
Alignment:
Q  100 aatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  54505903 aatttattattaatttaacaaattggtgtaccgatacacccaaa 54505946  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23639473 - 23639504
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  23639473 aaaattaaattttatttcgtcgaagtttttgg 23639504  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 27635908 - 27635877
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  27635908 aaaattaaattttatttcgtcgaagtttttgg 27635877  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 45754550 - 45754519
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  45754550 aaaattaaattttatttcgtcgaagtttttgg 45754519  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 46633841 - 46633872
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  46633841 aaaattaaattttatttcgtcgaagtttttgg 46633872  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 33612594 - 33612550
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||    
T  33612594 taatttattattaattttacgacttggtgtaccgatacacccaaa 33612550  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 32624247 - 32624203
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  32624247 taatttattattaatttaacgaattggtgtaccgatacacccaaa 32624203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 37963320 - 37963364
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||||| |||||||||||||||| || |||||    
T  37963320 taatttattattaatttaataaattggtgtaccgatacatccaaa 37963364  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2148364 - 2148395
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  2148364 aaaattaaattttatttcgtcgaagtttttgg 2148395  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 13589102 - 13589133
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  13589102 aaaattaaattttatttcgtcgaagtttttgg 13589133  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23189305 - 23189336
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  23189305 aaaattaaattttatttcgtcgaagtttttgg 23189336  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 13589202 - 13589244
Alignment:
Q  101 atttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||    
T  13589202 atttattattaattttacaacttggtgtaccgatacacccaaa 13589244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 22798408 - 22798450
Alignment:
Q  101 atttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||    
T  22798408 atttattattaattttacaacttggtgtaccgatacacccaaa 22798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 3052870 - 3052826
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||| ||||||||||||||| || |||||    
T  3052870 taatttattattaatttaacgaattggtgtaccgatacatccaaa 3052826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 29039948 - 29039992
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||    
T  29039948 taatttattattaatttaatgaattggtgtaccgatacacccaaa 29039992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37404840 - 37404871
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  37404840 aaaattaaattttatttcgtcgaagtttttgg 37404871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 41572044 - 41572079
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgat 134  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41572044 taatttattattaatttaacaaattagtgtaccgat 41572079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 26409955 - 26409999
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||    
T  26409955 taatttattattaatttaatgaattggtgtaccgatacacccaaa 26409999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 44500453 - 44500495
Alignment:
Q  101 atttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||| || | ||||||||||||||||||||||    
T  44500453 atttattattaattttacgacttggtgtaccgatgcacccaaa 44500495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 50465540 - 50465498
Alignment:
Q  101 atttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||    
T  50465540 atttattattaattttacaacttggtgtaccgatacacccaaa 50465498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 39444134 - 39444103
Alignment:
Q  1 aaaattaaattttatttcgtcgaagtttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  39444134 aaaattaaattttatttcgtcgaagtttttgg 39444103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 7574450 - 7574494
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||||||  |||||||||||||| || |||||    
T  7574450 taatttattattaatttaacggattggtgtaccgatacatccaaa 7574494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 18922647 - 18922603
Alignment:
Q  99 taatttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||    
T  18922647 taatttattattaattttacgacttggtgtaccgatacacccaaa 18922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 24025597 - 24025557
Alignment:
Q  103 ttattattaatttaacaaattggtgtaccgatgcacccaaa 143  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  24025597 ttattattaattttacaacttggtgtaccgatacacccaaa 24025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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