View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7588_low_4 (Length: 242)
Name: NF7588_low_4
Description: NF7588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7588_low_4 |
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| [»] scaffold0066 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 21081737 - 21081583
Alignment:
| Q |
3 |
agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg |
102 |
Q |
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| T |
21081737 |
agatgaacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaatgttgaagacgaaccagattcatcttctctatccacgtccaagctg |
21081638 |
T |
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| Q |
103 |
gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa |
157 |
Q |
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| T |
21081637 |
gaaattagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa |
21081583 |
T |
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Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 23746289 - 23746114
Alignment:
| Q |
3 |
agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagc |
100 |
Q |
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| T |
23746289 |
agatgaacatcattattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcgtccaagc |
23746190 |
T |
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| Q |
101 |
tggaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcat |
176 |
Q |
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| T |
23746189 |
tggaaatcagttgttgatcatcctaaagagttaatcatttgtgactctgctgataaagtaagaacaagatcatcat |
23746114 |
T |
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Target: scaffold0066 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 2175 - 2007
Alignment:
| Q |
10 |
catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagctggaaat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||| |
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| T |
2175 |
catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcctccaagctggaaat |
2076 |
T |
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| Q |
108 |
cagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcat |
176 |
Q |
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| T |
2075 |
cagttgttgatcatcctaaagagttaatcattggtgacactgctgataaagtaagaacaagatcatcat |
2007 |
T |
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Target: scaffold0163 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 19803 - 20040
Alignment:
| Q |
3 |
agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg |
102 |
Q |
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||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| |
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| T |
19803 |
agatgaacctcatcattctagtcatcaacaaacctctgatatatcaaaacaaaaggatgaagatgaaccagattcat----tcattcc---tccaagctg |
19895 |
T |
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| Q |
103 |
gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaag-----nnnnnnntggctatg |
197 |
Q |
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||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
19896 |
gaaatcagttgttgatcatccaaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg |
19995 |
T |
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| Q |
198 |
attttccaaatggagccaaaatccttaaatgaagctatcactgat |
242 |
Q |
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| T |
19996 |
atttctcaaatggagccaaaatccataaatgaagctatcattgat |
20040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 40089732 - 40089507
Alignment:
| Q |
15 |
tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt |
114 |
Q |
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||||||||| ||||||||||| |||||| |||||||||| ||| |||||| |||||| |||||| || ||| ||||| ||||||||||||||| |
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| T |
40089732 |
tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaaattcat----tcattcc---tccaaactggaaatcagttgt |
40089640 |
T |
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| Q |
115 |
tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaag-----nnnnnnntggctatgattttccaaatg |
209 |
Q |
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| T |
40089639 |
tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatttctcaaatg |
40089540 |
T |
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| Q |
210 |
gagccaaaatccttaaatgaagctatcactgat |
242 |
Q |
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| T |
40089539 |
gagccaaaatccataaatgaagctatcattgat |
40089507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 2159165 - 2159390
Alignment:
| Q |
15 |
tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt |
114 |
Q |
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||||||||| ||||||||||| |||||| |||||||||| ||| |||||| |||||| ||||| || ||| ||||||||||||||||||||| |
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| T |
2159165 |
tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaagttcat----tcattcc---tccaagctggaaatcagttgt |
2159257 |
T |
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| Q |
115 |
tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaag-----nnnnnnntggctatgattttccaaatg |
209 |
Q |
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||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||| |
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| T |
2159258 |
tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatctctcaaatg |
2159357 |
T |
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| Q |
210 |
gagccaaaatccttaaatgaagctatcactgat |
242 |
Q |
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| T |
2159358 |
gagccaaaatccataaatgaagctatcattgat |
2159390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 20175248 - 20175485
Alignment:
| Q |
3 |
agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg |
102 |
Q |
| |
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||||| || |||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||| || |||||| | ||| ||||||||| |
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| T |
20175248 |
agatgaacctcatcattctagacatcaacaaacatctgatatatcaaaacaaaaaaatgaagatgaaacaaattcata----cattcc---tccaagctg |
20175340 |
T |
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| Q |
103 |
gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaag-----nnnnnnntggctatg |
197 |
Q |
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||||||||||||||||||||| ||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
20175341 |
gaaatcagttgttgatcatccaaaaaaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg |
20175440 |
T |
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| Q |
198 |
attttccaaatggagccaaaatccttaaatgaagctatcactgat |
242 |
Q |
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|| | |||||||||||||||||| ||||||||||||||| |||| |
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| T |
20175441 |
atatctcaaatggagccaaaatccataaatgaagctatcattgat |
20175485 |
T |
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