View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7589_low_1 (Length: 611)
Name: NF7589_low_1
Description: NF7589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7589_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 254 - 594
Target Start/End: Original strand, 29689805 - 29690143
Alignment:
| Q |
254 |
gttaccattgttcaatccaatgcagcccaacaattatgttctaatttaaaaagatcaaggtgaagcatacaaatgctagggtcacatgaatcatgaatca |
353 |
Q |
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| T |
29689805 |
gttaccattgttcaatccaatgcagcccaacaattatgttctaatttaaaaagataaagttgaagcatacaaatgctagggtcacatgaatcatgaatca |
29689904 |
T |
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| Q |
354 |
gttcataaatactaataatttaatgcatccaaggctaaaatgtccacatgatagtatgaaatattagtgcttcaacttgtgattaaaaagtaaacgaaag |
453 |
Q |
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| T |
29689905 |
gttcataaatactaataatttaatgcatccaaggctaaaatgtccacatgatagtatgaaatattagtgcttcaacttgtgattaaaaagtaaccgaaag |
29690004 |
T |
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| Q |
454 |
aaaataattgatgagtttcctcattctatggtctaagcaacggatttaccagaaaaaactactaactgtcttcatcaactaacatatatttgtcaaacac |
553 |
Q |
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| T |
29690005 |
aaaataattgatgagtttcctcattctatggtctaagcaacggatttaccagaaaaaactactaactgtcctcatcaactaac--atatttgtcaaacac |
29690102 |
T |
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| Q |
554 |
ctacttagattagactactttaatttattttaccaaccatg |
594 |
Q |
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| T |
29690103 |
ctacttagattagactactttaatttattttaccaaccatg |
29690143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 29689558 - 29689758
Alignment:
| Q |
4 |
atgtcgaagaatataataattaatttaactaaaaagtaacaactacttaatctcttctccaataagcatttaataattcttttgctcccttgatggtaag |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29689558 |
atgtctaagaatataataattaatttaactaaaaagtaacaactacttaatctcttctccaataagcatttaataattcttttgctcccttgatggtaag |
29689657 |
T |
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| Q |
104 |
attagtctaatccaaaaacgagtaactgctaggcccacaaccaatgtatggcagttgggatccgcatcaggaaatattcttcaaactttgtcttcactaa |
203 |
Q |
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| T |
29689658 |
attagtctaatccaaaaacgagtaactgctaggcccacaaccaatgtatggcagttgggatccgcatcaggaaatattcttcaaactttgtcttcactaa |
29689757 |
T |
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| Q |
204 |
a |
204 |
Q |
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| T |
29689758 |
a |
29689758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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