View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7589_low_2 (Length: 562)
Name: NF7589_low_2
Description: NF7589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7589_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 2912127 - 2911592
Alignment:
| Q |
19 |
ggattgaaatgaatgaagattgtgcagtgtagtgtatactaatagtaacacaaaatgaaataatggctttatgttacttataaaacatggtgctacctgt |
118 |
Q |
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| T |
2912127 |
ggattgaaatgaatgaagattgtgcagtgtagtgtatactaatagtaacacaaaatgaaataatggctttatcttacttataaaacatggtgctacctgt |
2912028 |
T |
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| Q |
119 |
tgaaagaggtggaaacaaccggctaaggatgtggtcttatttggcggagtttccaaacaagaaaataacaatgggcataactcaactctgtgggctgaga |
218 |
Q |
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| T |
2912027 |
tgaaagaggtggaaacaaccggctaaggatgtggtcttatttggcggagtttccaaagaagaaaataacaatgggcataactcaactctgtgggctgaga |
2911928 |
T |
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| Q |
219 |
taggacacgtgtcagttacaacatcatggactgaaataagtaacaatgccacgttggccatttgcaaagtttacgtgtataatgatgtat----ttagct |
314 |
Q |
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| T |
2911927 |
taggacacgtgtcagttacaacatcatggactgaaataagtaacaatgccacgttggccatttgcaaagtttacgtgtataatgatgtatttaattagct |
2911828 |
T |
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| Q |
315 |
ttggttttggttgggattggaattaaatcaaagagtttgtatatgactgactatatttggaggctactggatttaattgatatatgatcacccacgtaga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2911827 |
ttggttttggttgggattggaattaaatcaaagagtttgtata----tgactatatttggaggctactggatttaattgatatatgatgacccacgtaga |
2911732 |
T |
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| Q |
415 |
tgtatatgtataccactttgtactctattatccattgagtacgtatacagcttattgtttttataatatttgtgacgtggcagattatggatataaaaaa |
514 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2911731 |
tgtatatgcataccactttgtactctattatccattgagtacgtatacagcttattgtttttataatatttgtgacgtggcagattatggatataaaaaa |
2911632 |
T |
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| Q |
515 |
ttttggtaac--gatgagcaaatagtcactttggtctctg |
552 |
Q |
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| T |
2911631 |
atttggtaacatgatgagcaaatagtcactttggtctctg |
2911592 |
T |
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