View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7590_high_17 (Length: 265)
Name: NF7590_high_17
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 2794153 - 2793951
Alignment:
| Q |
47 |
attgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcc |
146 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794153 |
attgaatgtggaaggtgaattgcagaacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcc |
2794054 |
T |
|
| Q |
147 |
cagcctaaaaaacaagcaagttcaacgcttatgattcaaacaacgaaaaaagaaatagttgagtagtttcaccaaatttgaaatgaaaagagttgttctg |
246 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
2794053 |
cagcctaaaaatcaagcaggttcaacgcttatgattcaaacacggaaaaaaaaaatagttgagtagtttcaccaaatttgaaattaaaagacttgttctg |
2793954 |
T |
|
| Q |
247 |
att |
249 |
Q |
| |
|
||| |
|
|
| T |
2793953 |
att |
2793951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 48669108 - 48668982
Alignment:
| Q |
46 |
cattgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatc |
145 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
48669108 |
cattgaatgtggaaggtgacctgcagcacttaccttttcggtcaaatcaagtgctccactgataattgtcgtctcatcatgtgtaagctcgccccctttc |
48669009 |
T |
|
| Q |
146 |
ccagcctaaaaaacaagcaagttcaac |
172 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
48669008 |
ccagcctaaaaaacaagaaagttcaac |
48668982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 16389885 - 16389734
Alignment:
| Q |
13 |
aatatcatacattgaaaaatagtgttttatggacattgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataatt |
112 |
Q |
| |
|
|||||||||||||||||| | || | ||| |||||| |||| ||||||||||||| |||||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
16389885 |
aatatcatacattgaaaatttgtatcgtattgacattagttgtgaaaggtgaattgcagcacttaccttttcggtcaaatcaagtgctccactgataatt |
16389786 |
T |
|
| Q |
113 |
gtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaaacaagca |
164 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
16389785 |
gttgtctcatcatgtgtaagttcgccccctttcccagcctaaaaaacaagca |
16389734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University