View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_high_25 (Length: 210)
Name: NF7590_high_25
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 34432973 - 34432781
Alignment:
| Q |
1 |
actcaaaaaccacctttaaaaacaagtctaaatacctatataaacttccacttataaaatcaatactaaatcaagnnnnnnnacggtataagtgaaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34432973 |
actcaaaaaccacctttaaaaacaagtctaaatacctatataaacttccacttataaaatcaatactaaatcaagtttttttacggtattagtgaaatat |
34432874 |
T |
|
| Q |
101 |
tgaagtcgccattttccattaccaataattaagttgtatttgagaacttcat-tgttcttcaataccactcacccaccagccttccatatata |
192 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34432873 |
tgaagtcgccattttccattaccaataattaagttgcatttgagaacttcatgtgttcttcaataccactcacccaccagccttccatatata |
34432781 |
T |
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