View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7590_high_4 (Length: 542)
Name: NF7590_high_4
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 30089848 - 30090365
Alignment:
| Q |
1 |
tgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatgaaacagtctccatgattgccggatcctatggatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30089848 |
tgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatgaaacagtctccatgattgccggatcctatggatac |
30089947 |
T |
|
| Q |
101 |
attgcccctggtgagttactccttacaatactgactatttttatttttgcagggtaagcaatgtttcttcattgtccgatttaaaatattcacatatcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
30089948 |
attgcccctggtgagttactccttacaatactgactatttttatttttgcagggtaagcaatgtttcttcattgttcgatttaaaatattcacatttcta |
30090047 |
T |
|
| Q |
201 |
accatttcaatgctttactattttggcagaatatggatactccttgaaggtagatgaaaggattgacatttacagcttcggaatagttcttttggagctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30090048 |
accatttcaatgctttactattttggcagaatatggatactccttgaaggtagatgaaaagattgacatttacagctttggaatagttcttttggagctt |
30090147 |
T |
|
| Q |
301 |
attacaggaaagcggcctatagatccggactttggagaatctgtagacattgtagggtggattagaaggaagatagacaaaaattctccagaagaggcgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30090148 |
attacaggaaagcggcctatagatccggactttggagagtctgtagacattgtagggtggattagaaggaagatagacaaaaattctccagaagaggcgt |
30090247 |
T |
|
| Q |
401 |
tagatccaagtgtaggaaactgtaagcatgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaagctacctaaggaaagacc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30090248 |
tagatccaagtgtaggaaactgtaagcatgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaagctacctaaggaaagacc |
30090347 |
T |
|
| Q |
501 |
ctccatgagggatgttat |
518 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30090348 |
ctccatgagggatgttat |
30090365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 509
Target Start/End: Complemental strand, 35780929 - 35780847
Alignment:
| Q |
427 |
catgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaagctacctaaggaaagaccctccatgag |
509 |
Q |
| |
|
|||||||| |||||||||||| | || || | || |||||||| |||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
35780929 |
catgttcaggaagagatgcttcttgtcctgcggattgcacttctatgcactgcaaagctccccaaggaaagaccatccatgag |
35780847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35781373 - 35781308
Alignment:
| Q |
1 |
tgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatga |
66 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| || || | ||||||| ||| |||||||| |
|
|
| T |
35781373 |
tgacgcaaatttggaggcaaggatagcagatttcggtttggcgaggatgatgattcaaaagaatga |
35781308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 226 - 518
Target Start/End: Complemental strand, 39467645 - 39467350
Alignment:
| Q |
226 |
gcagaatatggatactccttgaaggtagatgaaaggattgacatttacagcttcggaatagttcttttggagcttattacaggaaagcggcctatagatc |
325 |
Q |
| |
|
|||||||| ||||| | |||||||| ||||||| |||||| | ||||| | ||| ||||| | ||||||||| | ||||||||| |||| ||||| |
|
|
| T |
39467645 |
gcagaatacggatatgcattgaaggttgatgaaaagattgatgtatacagttatggagtagttttattggagcttgtcacaggaaagaggccattagatt |
39467546 |
T |
|
| Q |
326 |
cggactttggagaatctgtagacattgtagggtggattagaaggaagat---agacaaaaattctccagaagaggcgttagatccaagtgtaggaaactg |
422 |
Q |
| |
|
| || ||||||||| |||||||||||||| ||||||||||||||| || ||| || || |||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
39467545 |
cagaatttggagaaagtgtagacattgtagagtggattagaaggaaaattagagaaaacaaatctctagaagaagcattagatccaagtgtaggaaactg |
39467446 |
T |
|
| Q |
423 |
taagcatgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaagctacctaaggaaagaccctccatgagggatgttat |
518 |
Q |
| |
|
| |||||| ||||||||||||| ||||| | ||||||||| || |||||||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
39467445 |
cagacatgttatagaagagatgcttctagttttaagaatagcagttgtttgcactgctaagcttccaaaggaaagaccaagcatgagggatgttat |
39467350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 39468096 - 39467981
Alignment:
| Q |
5 |
gcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatgaaacagtctccatgattgccggatcctatggatacattg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| |||||||| |||||| |||||||||||||||| ||||| | |
|
|
| T |
39468096 |
gcaaatcttgaggcaaggatagcagatttcgggttagccaagatgatgatccagaagaacgaaacagtatccatggttgccggatcctatggctacatcg |
39467997 |
T |
|
| Q |
105 |
cccctggtgagttact |
120 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
39467996 |
ctcctggtaagttact |
39467981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 452
Target Start/End: Complemental strand, 5264413 - 5264298
Alignment:
| Q |
337 |
gaatctgtagacattgtagggtggattagaaggaagatagacaaaaattctccagaagaggcgttaga-tccaagtgtaggaaactgtaagcatgttcaa |
435 |
Q |
| |
|
|||||| || ||||||||| || ||||| |||| |||||||||| | |||||| ||||||| ||||| ||||| | ||| ||||| |||||||||||| |
|
|
| T |
5264413 |
gaatctataaacattgtagagtagattaaaaggtagatagacaatacatctccaaaagaggcattagactccaatt-tagaaaactacaagcatgttcaa |
5264315 |
T |
|
| Q |
436 |
gaagagatgcttttagt |
452 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
5264314 |
ggagagatgcttttagt |
5264298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University