View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_high_6 (Length: 504)
Name: NF7590_high_6
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 486
Target Start/End: Original strand, 48487196 - 48487667
Alignment:
| Q |
15 |
aatatcacccaaatgaaaatccactagtttgaaaatctctttcccttttttacccttttcatcaaaacaatttccactctccactttaaccaataacata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48487196 |
aatatcacccaaatgaaaatccactagtttgaaaatctctttcccttttttacccttttcatcaaaacaatttccactctccgctttaaccaataacatt |
48487295 |
T |
|
| Q |
115 |
cgactccctttaaccgtctttttaatgctcttaaacgacttagcatgcttctcataatcaaattcatcaaaaccattatcactctcttttttcggatcgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487296 |
cgactccctttaaccgtctttttaatgctcttaaacgacttagcatgcttctcataatcaaattcatcaaaaccattatcactctcttttttcggatcgc |
48487395 |
T |
|
| Q |
215 |
gtttgttttcctttcccttatttacaaatctaattccagtgtcactactctcaccttcaaaactgagcttggagttttgtatttgtcgattattcttctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487396 |
atttgttttcctttcccttatttacaaatctaattacagtatcactactctcaccttcaaaactgagcttggagttttgtatttgtcgattattcttctt |
48487495 |
T |
|
| Q |
315 |
ctgtgtaccgagaagtacggagtccttgaacttggatggaagcattttaacgcggcctctggatgatagcgacaatggaggtgcattttcagctacaata |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
48487496 |
ctgtgtaccgagaagtacggagtccttgaacttggatggaagcattttaacgcggcctctggatgctcgcgacaatggaggtgcattttcagctacaata |
48487595 |
T |
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| Q |
415 |
ttcaaatctgtggaagctgaattggagtggatctcgccatcatggaaagagtaaaaggcgttattgagtttg |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487596 |
ttcaaatctgtggaagctgaattggagtggatctcgccatcatggaaagagtaaaaggcgttattgagtttg |
48487667 |
T |
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