View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7590_high_7 (Length: 502)

Name: NF7590_high_7
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7590_high_7
NF7590_high_7
[»] chr2 (3 HSPs)
chr2 (7-486)||(21260129-21260608)
chr2 (34-250)||(32225035-32225248)
chr2 (432-486)||(21264710-21264764)
[»] chr1 (3 HSPs)
chr1 (7-486)||(47800700-47801180)
chr1 (440-486)||(47805282-47805328)
chr1 (112-171)||(34171985-34172044)
[»] chr3 (3 HSPs)
chr3 (7-486)||(6843250-6843729)
chr3 (440-486)||(6847853-6847899)
chr3 (112-171)||(5865001-5865060)
[»] scaffold0043 (1 HSPs)
scaffold0043 (65-232)||(55859-56026)
[»] chr7 (1 HSPs)
chr7 (34-161)||(38461969-38462096)
[»] chr6 (1 HSPs)
chr6 (111-198)||(526733-526820)
[»] chr5 (2 HSPs)
chr5 (112-171)||(15669568-15669627)
chr5 (134-186)||(41297457-41297509)


Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Complemental strand, 21260608 - 21260129
Alignment:
Q  7 tcgaagaatattactgatgagggaggtgtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtt 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260608 tcgaataaaattactgatgagggaggtgtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtt 21260509  T
Q  107 tgaggaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260508 tgaggaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgt 21260409  T
Q  207 ctaatttgatgccgattggtgccaccaccgtatgatcagaattaacattaacttgtgacggggctgcagctcggttcaaaacttctgtcattttcgccgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21260408 ctaatttgatgccgattggtgccaccaccgtatgatcagaattaacattaacttgtgacggggctgcagctcggttcaaaacttccgtcattttcgccgt 21260309  T
Q  307 caattcagctaggatggaggacgatgatgtgtcttccgtattagaatcagagtcggccatggaaggaggtgaatttttagggtttcagagttatattagg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21260308 caattcagctaggatggaggacgatgatgtgtcttccgtattagaatcagagtcggccatggaaggaggtggatttttagggtttcagagttatattagg 21260209  T
Q  407 ttttggatcgaaagctctgataccatgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaag 486  Q
    |||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  21260208 ttttggatcagaagctctgataccatgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaag 21260129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 34 - 250
Target Start/End: Original strand, 32225035 - 32225248
Alignment:
Q  34 gtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtttgaggaggttgaggaagatctccattg 133  Q
    |||||| ||||| || | |||||| || || |||||||| ||||| |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||    
T  32225035 gtccatggagttgattatccatcccttaacgatcgcgttctcagttcgccgacgttgaaaggtagggtctgtttgaggaggttgcggaagatctccattg 32225134  T
Q  134 atataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgtctaatttgatgccgattggtgccacca 233  Q
    || || || || ||||||||||| ||||||||||||||||| ||||  ||| |||| || |||||| |||| || ||||||||||| |||||   | |||    
T  32225135 atgtatcctagtttgtctttgccagagatatacatctcgaccacctaagactaaaggggatagttgttgccatccaatttgatgccaattgg---cgcca 32225231  T
Q  234 ccgtatgatcagaatta 250  Q
    |||||||||||||||||    
T  32225232 ccgtatgatcagaatta 32225248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 486
Target Start/End: Complemental strand, 21264764 - 21264710
Alignment:
Q  432 tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaag 486  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  21264764 tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaag 21264710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Complemental strand, 47801180 - 47800700
Alignment:
Q  7 tcgaagaatattactgatgagggaggtgtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtt 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47801180 tcgaataaaattactgatgagggaggtgtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtt 47801081  T
Q  107 tgaggaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47801080 tgaggaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgt 47800981  T
Q  207 ctaatttgatgccgattggtgccaccaccgtatgatcagaattaacattaacttgtgacggggctgcagctcggttcaaaacttctgtcattttcgccgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47800980 ctaatttgatgccgattggtgccaccaccgtatgatcagaactaacattaacttgtgacggggctgcagctcggttcaaaacttccgtcattttcgccgt 47800881  T
Q  307 caattcagctaggatggaggacgatgatgtgtcttccgtattagaatcagagtcggccatggaaggaggtgaatttttagggtttcagagttatattagg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47800880 caattcagctaggatggaggacgatgatgtgtcttccgtattagaatcagagtcggccatggaaggaggtggatttttagggtttcagagttatattagg 47800781  T
Q  407 ttttggatcgaaagctc-tgataccatgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaag 486  Q
    |||||||||  |||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  47800780 ttttggatcagaagctcttgataccatgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaag 47800700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 47805328 - 47805282
Alignment:
Q  440 tgatagagtaggtctcattttatttctttccaaatctacattacaag 486  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  47805328 tgatacagtaggtctcattttatttctttccaaatctacattacaag 47805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 34171985 - 34172044
Alignment:
Q  112 aggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctc 171  Q
    |||||| |||| |||||||||||| || |||| ||||||||| |||||||||||||||||    
T  34171985 aggttggggaatatctccattgatgtaccccaacttgtcttttcctgagatatacatctc 34172044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Complemental strand, 6843729 - 6843250
Alignment:
Q  7 tcgaagaatattactgatgagggaggtgtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtt 106  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6843729 tcgaataaaattactgatgagggaggtgtccatagagttaatcagccatccttttacaatcgtgttgtcagtccgccaacgtcgaaaagtagggtcagtt 6843630  T
Q  107 tgaggaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6843629 tgaggaggttgaggaagatctccattgatataacccagcttgtctgtgcctgagatatacatctcgacaacctgggaccaaagtgggtagttgctgccgt 6843530  T
Q  207 ctaatttgatgccgattggtgccaccaccgtatgatcagaattaacattaacttgtgacggggctgcagctcggttcaaaacttctgtcattttcgccgt 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  6843529 ctaatttgatgccgattggtgccaccaccgtatgatcaaaattaacattaacttgtgacggggctgcagcttggttcaaaacttccgtcattttcgccgt 6843430  T
Q  307 caattcagctaggatggaggacgatgatgtgtcttccgtattagaatcagagtcggccatggaaggaggtgaatttttagggtttcagagttatattagg 406  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  6843429 caattcagctaggatggaggacgatgatgtgtcttccatattagaatcagagtcggccatggaaggaggtggatttttagggtttcagaattatattagg 6843330  T
Q  407 ttttggatcgaaagctctgataccatgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaag 486  Q
    |||||||||  ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  6843329 ttttggatcagaagctctgataccatgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaag 6843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 6847899 - 6847853
Alignment:
Q  440 tgatagagtaggtctcattttatttctttccaaatctacattacaag 486  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  6847899 tgatacagtaggtctcattttatttctttccaaatctacattacaag 6847853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 5865001 - 5865060
Alignment:
Q  112 aggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctc 171  Q
    |||||| |||| |||||||||||| || |||| ||||||||| |||||||||||||||||    
T  5865001 aggttggggaatatctccattgatgtaccccaacttgtcttttcctgagatatacatctc 5865060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 56026 - 55859
Alignment:
Q  65 atcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtttgaggaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatat 164  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||    
T  56026 atcgcgttgtcagtccgccaatgtcgaaaggtagggtctgtttgaggaggttgcggaagatctccattgatgtatcccagtttgtctttgcctgagatat 55927  T
Q  165 acatctcgacaacctgggaccaaagtgggtagttgctgccgtctaatttgatgccgattggtgccacc 232  Q
    ||||||| || |||||||||||||| || ||||||||||| || ||||||||||| || || ||||||    
T  55926 acatctcaaccacctgggaccaaaggggatagttgctgccatccaatttgatgccaatcggcgccacc 55859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 38461969 - 38462096
Alignment:
Q  34 gtccatagagttaatcagccatccttttacaatcgcgttgtcagtccgccaacgtcgaaaagtagggtcagtttgaggaggttgaggaagatctccattg 133  Q
    |||||| ||||| || | |||||| || || |||||||||||||||| |||||||||||| |||||||| |||||||||||| | |||||||||||||||    
T  38461969 gtccatggagttgattatccatcccttaacgatcgcgttgtcagtcccccaacgtcgaaaggtagggtctgtttgaggaggtggcggaagatctccattg 38462068  T
Q  134 atataacccagcttgtctttgcctgaga 161  Q
    || || ||||| ||||||||||||||||    
T  38462069 atgtatcccagtttgtctttgcctgaga 38462096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 526733 - 526820
Alignment:
Q  111 gaggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctcgacaacctgggaccaaagtgggtagtt 198  Q
    ||||||| || ||||||||||||||||| ||||  ||||| || || |||||||||||||| ||||  |||||||| ||||| |||||    
T  526733 gaggttgtggcagatctccattgatataccccaatttgtcctttccagagatatacatctcaacaatttgggaccatagtggatagtt 526820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 15669568 - 15669627
Alignment:
Q  112 aggttgaggaagatctccattgatataacccagcttgtctttgcctgagatatacatctc 171  Q
    |||||| |||| |||||||||||| || |||| ||||||||| |||||||||||||||||    
T  15669568 aggttggggaatatctccattgatgtaccccaacttgtcttttcctgagatatacatctc 15669627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 41297509 - 41297457
Alignment:
Q  134 atataacccagcttgtctttgcctgagatatacatctcgacaacctgggacca 186  Q
    ||||| ||||| ||||||||||||||||| ||||||||  | |||||||||||    
T  41297509 atatatcccagtttgtctttgcctgagatgtacatctcagccacctgggacca 41297457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University