View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_1 (Length: 748)
Name: NF7590_low_1
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 84 - 504
Target Start/End: Complemental strand, 39305545 - 39305122
Alignment:
| Q |
84 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctcn |
183 |
Q |
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| T |
39305545 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctca |
39305446 |
T |
|
| Q |
184 |
nnnnnnn-tctaagcattctcttagcacgtcaaaattaattaattatgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
282 |
Q |
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| T |
39305445 |
aaaaaaaatctaagcattctctaagcacgtcaaaattaatta----tgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
39305350 |
T |
|
| Q |
283 |
cagaatcctctcatgagtcattggccatcataagtacgtttagtgattctgtttgaatattggcatatgattgaatttggacttgttgtgcatattcac- |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39305349 |
cagaatcctctcatgagtcattggccatcataagtacgttgagtgattctgtttgaatattggcatatgattgaatttagacttgttgtgcatattcact |
39305250 |
T |
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| Q |
382 |
--tcagtgcaacttttgtgcaatttatcattttccttgtcaatattgcacga----caatgacaaacaaaagcttcaagatcattttattttgaaaggtg |
475 |
Q |
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| T |
39305249 |
aattagtgcaacttttgtgcaatttatcattttccttgtcaatattacacgacaatcaatgacaaacaaaagcttcaagatcattttattttgaaaagtg |
39305150 |
T |
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| Q |
476 |
gcnnnnnnncattacattaattgtatgtg |
504 |
Q |
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| T |
39305149 |
gc-aaaaaacattacattaattgtatgtg |
39305122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 595 - 731
Target Start/End: Complemental strand, 39305031 - 39304895
Alignment:
| Q |
595 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgcggtcgtaattgtttttgaatcgaatttggagag |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39305031 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgctgtcgtaattgtttttgaatcgaatttggagag |
39304932 |
T |
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| Q |
695 |
aaaggaagtggaaatggttgatcagtagtcatataag |
731 |
Q |
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| T |
39304931 |
aaaggaagtggaaatggttgatcagtagtcatataag |
39304895 |
T |
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