View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_10 (Length: 424)
Name: NF7590_low_10
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 51843508 - 51843915
Alignment:
| Q |
1 |
aggctccaaaataacaagacagccataccagtcttgaattaaaacataacaaattgaaacttaagagtagaaactatacgtgctaagtaacaaacctaag |
100 |
Q |
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| T |
51843508 |
aggctccaaaataacaagacagccataccagtcttgaattaaaacaaaacaaattgaaacttaagagtagaaactatacgtgctaagtaacaaacctaag |
51843607 |
T |
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| Q |
101 |
aacatagttttcctggaaaaatatattgatacaaagtaaggatttgttattcttttctaaactttgtccagccatttcagttacatttaactaagaatgg |
200 |
Q |
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| T |
51843608 |
aacatagttttcctggaaaaatatattgatacaaagtaaggatttgttattcttttctaaactttgtccagccatttcagttacatttaactaagagtgg |
51843707 |
T |
|
| Q |
201 |
aaaattgtttgcttccaagtctaaatccactatccgtcgaagt-nnnnnnnngtctaaatctattcttagttaaatgtaactggggtaatttttaattcc |
299 |
Q |
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| T |
51843708 |
aaaattgtttgcttccaagtctaaatccactatccgtcgaagtaaaaaaaaagtctaaatctattcttagttaaatgtaactggggtaatttttaattcc |
51843807 |
T |
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| Q |
300 |
tttaaggaaggagaagaagcaaacaattaatcctcttctccttccttgaaggaattaaaaattaccccaagcacgacatatcaaagacaaaacaaaagca |
399 |
Q |
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| T |
51843808 |
ttcaaggaaggagaagaagcaaacaattaatcctcttctccttccttgaaggaattaaaaattaccccaagcacgacatatcaaagacaaaacaaaagca |
51843907 |
T |
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| Q |
400 |
tgggggtt |
407 |
Q |
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| T |
51843908 |
tgggggtt |
51843915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 51843876 - 51843789
Alignment:
| Q |
281 |
tggggtaatttttaattcctttaaggaaggagaagaagcaaacaattaat--cctcttctccttccttgaaggaattaaaaattacccca |
368 |
Q |
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| T |
51843876 |
tggggtaatttttaattccttcaaggaaggagaagagg--attaattgtttgcttcttctccttccttgaaggaattaaaaattacccca |
51843789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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