View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_16 (Length: 380)
Name: NF7590_low_16
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 17517250 - 17517605
Alignment:
| Q |
10 |
aagaatatggtttatatgaatccaatagatttaagcacaagttgtaatatattttcatacattatataggataggataggagtgtgagtgtcttgttttc |
109 |
Q |
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| T |
17517250 |
aagaaaatggtttatatgaatccaatagatttaagcacaagttgcaatacattttcatacattctatat-ataggataggagtgtgagtgtcttgttttc |
17517348 |
T |
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| Q |
110 |
aaagagtgtactcttgaacaaaataaggtgagaacattgtggttcctttatattttgcactatgttctacttattataatcacattcatcattcatgtgt |
209 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
17517349 |
aaagagtgcactcttgaacaaaataaggtgagaacattgtggttcctttatattttgcattatgttttacttattataatcacattcatcattcatgtgt |
17517448 |
T |
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| Q |
210 |
tct-aacagtactttattcattacttcattgtttgagcataatttgtaagtgaaatttgggctcctttttcaatgttttatatttctgtcacgacattgc |
308 |
Q |
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||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17517449 |
tcttaacagtactttattcatcactttattgtttgagcatcatttgtaagtgaaatttgggctcctttttcaacgttttatatttctgtcacgacattgc |
17517548 |
T |
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| Q |
309 |
tcgtgtcgcgattcttgatattgtggagaatagcagttaactgtagtgtcaatagtg |
365 |
Q |
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| T |
17517549 |
tcgtgtcgcgattcttgatattgtggagaatagcagttaactgtagtgtcaatagtg |
17517605 |
T |
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