View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7590_low_19 (Length: 336)

Name: NF7590_low_19
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7590_low_19
NF7590_low_19
[»] chr2 (3 HSPs)
chr2 (11-213)||(40343977-40344176)
chr2 (293-323)||(6884159-6884189)
chr2 (290-323)||(34665568-34665601)
[»] chr4 (2 HSPs)
chr4 (223-264)||(52593010-52593051)
chr4 (295-323)||(51436190-51436218)
[»] chr8 (4 HSPs)
chr8 (293-323)||(44934899-44934929)
chr8 (295-323)||(27970014-27970042)
chr8 (295-323)||(29773447-29773475)
chr8 (295-323)||(34047793-34047821)
[»] chr7 (2 HSPs)
chr7 (289-323)||(1343015-1343049)
chr7 (295-323)||(3909930-3909958)
[»] chr5 (2 HSPs)
chr5 (293-323)||(21605648-21605678)
chr5 (295-323)||(19189108-19189136)
[»] chr6 (4 HSPs)
chr6 (294-323)||(2258904-2258933)
chr6 (294-323)||(17545606-17545635)
chr6 (295-323)||(6848512-6848540)
chr6 (295-323)||(7344692-7344720)
[»] scaffold1457 (1 HSPs)
scaffold1457 (291-323)||(862-894)
[»] chr3 (2 HSPs)
chr3 (295-323)||(29786973-29787001)
chr3 (295-323)||(42067581-42067609)
[»] chr1 (5 HSPs)
chr1 (295-323)||(922218-922246)
chr1 (295-323)||(27295060-27295088)
chr1 (295-323)||(34256455-34256483)
chr1 (295-323)||(35305153-35305181)
chr1 (295-323)||(44978871-44978899)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 40344176 - 40343977
Alignment:
Q  11 agaacctgtgaaaccaaacaggccatatgtgcaatgtgtgatcctggtaggaaaggagtgtgatgagacaggtgactcattgcttgcagattaggacatg 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40344176 agaatctgtgaaaccaaacaggccatatgtgcaatgtgtgatcctggtaggaaaggagtgtggtgagacaggtgactcattgcttgcagattaggacatg 40344077  T
Q  111 tttgcaatgaaagaagttttgttcatccctagttagaacggtgaatctctcgagtactatgtttgcaggaacataagattgatgatgaacctgaaaaatc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  40344076 tttgcaatgaaagaagttttgttcatccctagttagaacggtgaatctctcgagtactatgtttgcaggaacataagattg---atgaacctgaaaaatc 40343980  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Original strand, 6884159 - 6884189
Alignment:
Q  293 gacaaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||||    
T  6884159 gacaaattctatggtacacccaacaatttga 6884189  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 34665568 - 34665601
Alignment:
Q  290 atagacaaattctatggtacacccaacaatttga 323  Q
    ||||||||||||||||||| ||||||||||||||    
T  34665568 atagacaaattctatggtatacccaacaatttga 34665601  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 52593051 - 52593010
Alignment:
Q  223 agtttaaaatggacccatgaaaattttggttcatcatggacc 264  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  52593051 agtttaaaatggacccatgaaaattttgattcatcatggacc 52593010  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 51436218 - 51436190
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  51436218 caaattctatggtacacccaacaatttga 51436190  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Original strand, 44934899 - 44934929
Alignment:
Q  293 gacaaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||||    
T  44934899 gacaaattctatggtacacccaacaatttga 44934929  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 27970014 - 27970042
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  27970014 caaattctatggtacacccaacaatttga 27970042  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 29773447 - 29773475
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  29773447 caaattctatggtacacccaacaatttga 29773475  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 34047821 - 34047793
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  34047821 caaattctatggtacacccaacaatttga 34047793  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 1343015 - 1343049
Alignment:
Q  289 tatagacaaattctatggtacacccaacaatttga 323  Q
    ||||| |||||||||||||||||||||||||||||    
T  1343015 tataggcaaattctatggtacacccaacaatttga 1343049  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 3909930 - 3909958
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  3909930 caaattctatggtacacccaacaatttga 3909958  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Original strand, 21605648 - 21605678
Alignment:
Q  293 gacaaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||||    
T  21605648 gacaaattctatggtacacccaacaatttga 21605678  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 19189108 - 19189136
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  19189108 caaattctatggtacacccaacaatttga 19189136  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 2258904 - 2258933
Alignment:
Q  294 acaaattctatggtacacccaacaatttga 323  Q
    ||||||||||||||||||||||||||||||    
T  2258904 acaaattctatggtacacccaacaatttga 2258933  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 17545606 - 17545635
Alignment:
Q  294 acaaattctatggtacacccaacaatttga 323  Q
    ||||||||||||||||||||||||||||||    
T  17545606 acaaattctatggtacacccaacaatttga 17545635  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 6848512 - 6848540
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  6848512 caaattctatggtacacccaacaatttga 6848540  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 7344720 - 7344692
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  7344720 caaattctatggtacacccaacaatttga 7344692  T

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Target: scaffold1457 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1457
Description:

Target: scaffold1457; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 862 - 894
Alignment:
Q  291 tagacaaattctatggtacacccaacaatttga 323  Q
    ||||||||||||||||||||| |||||||||||    
T  862 tagacaaattctatggtacactcaacaatttga 894  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 29787001 - 29786973
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  29787001 caaattctatggtacacccaacaatttga 29786973  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 42067581 - 42067609
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  42067581 caaattctatggtacacccaacaatttga 42067609  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 922246 - 922218
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  922246 caaattctatggtacacccaacaatttga 922218  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 27295060 - 27295088
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  27295060 caaattctatggtacacccaacaatttga 27295088  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 34256455 - 34256483
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  34256455 caaattctatggtacacccaacaatttga 34256483  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 35305153 - 35305181
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  35305153 caaattctatggtacacccaacaatttga 35305181  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 44978871 - 44978899
Alignment:
Q  295 caaattctatggtacacccaacaatttga 323  Q
    |||||||||||||||||||||||||||||    
T  44978871 caaattctatggtacacccaacaatttga 44978899  T

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