View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7590_low_20 (Length: 309)

Name: NF7590_low_20
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7590_low_20
NF7590_low_20
[»] chr8 (5 HSPs)
chr8 (17-290)||(38189029-38189302)
chr8 (194-229)||(8499085-8499120)
chr8 (192-222)||(21652968-21652998)
chr8 (175-227)||(37153012-37153064)
chr8 (183-219)||(44426533-44426569)
[»] chr3 (1 HSPs)
chr3 (174-227)||(37138242-37138295)
[»] chr7 (1 HSPs)
chr7 (171-227)||(31002936-31002992)
[»] chr5 (1 HSPs)
chr5 (192-227)||(29845052-29845087)
[»] chr1 (4 HSPs)
chr1 (173-227)||(34619498-34619552)
chr1 (183-227)||(4920896-4920940)
chr1 (189-229)||(11218097-11218137)
chr1 (183-227)||(47498989-47499032)
[»] chr4 (2 HSPs)
chr4 (188-233)||(44797757-44797801)
chr4 (183-227)||(35064735-35064779)
[»] chr2 (2 HSPs)
chr2 (183-219)||(18279828-18279864)
chr2 (183-227)||(41880648-41880692)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 38189029 - 38189302
Alignment:
Q  17 cctgtgagggtgataatgaagaatcagatgaactcgcacaacccaaaatcaagcttgcaatgtgggtatgtcaattgttttcagtttattttcatatgtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38189029 cctgtgagggtgataatgaagaatcagatgaactcgcacaacccaaaatcaagcttgcaatgtgggtatgtcaattgttttcagtttattttcatatgtc 38189128  T
Q  117 ctcaaaataccttgtgaacataatttaactgtattttatcctctgtcaaaatagtagcttatacacaagcacttgtgctataagttgcaaattaagttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38189129 ctcaaaataccttgtgaacataatttaactgtattttatcctctgtcaaaatagtagcttatacacaagcacttgtgctataagttgcaaattaagttgt 38189228  T
Q  217 ttatcccaacaagccttactttagcgtttagcacctcctcctctaagagtatctccgattatggatttttatgg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38189229 ttatcccaacaagccttactttagcgtttagcacctcctcctctaagagtatctccgattatggatttttatgg 38189302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 8499120 - 8499085
Alignment:
Q  194 ctataagttgcaaattaagttgtttatcccaacaag 229  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8499120 ctataagttgcaaattaagttgtttatccaaacaag 8499085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 21652998 - 21652968
Alignment:
Q  192 tgctataagttgcaaattaagttgtttatcc 222  Q
    |||||||||||||||||||||||||||||||    
T  21652998 tgctataagttgcaaattaagttgtttatcc 21652968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 37153012 - 37153064
Alignment:
Q  175 ttatacacaagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    ||||||| |||| ||| | |||||||||||||||||||||||| |||| ||||    
T  37153012 ttatacataagcgcttatcctataagttgcaaattaagttgttaatccaaaca 37153064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 44426533 - 44426569
Alignment:
Q  183 aagcacttgtgctataagttgcaaattaagttgttta 219  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  44426533 aagcacttatgctataagctgcaaattaagttgttta 44426569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 37138295 - 37138242
Alignment:
Q  174 cttatacacaagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    |||||||| |||||||| ||||||||| | ||||||||||||||||||| ||||    
T  37138295 cttatacataagcacttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 31002936 - 31002992
Alignment:
Q  171 tagcttatacacaagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    ||||||| ||| |||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  31002936 tagcttacacataagcgcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 29845052 - 29845087
Alignment:
Q  192 tgctataagttgcaaattaagttgtttatcccaaca 227  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29845052 tgctataagttgcaaattaagttgtttatccaaaca 29845087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 34619498 - 34619552
Alignment:
Q  173 gcttatacacaagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    ||||||||| ||||| || ||||||||| ||||||||||| ||||||||| ||||    
T  34619498 gcttatacataagcaattatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 4920896 - 4920940
Alignment:
Q  183 aagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    |||||||| ||||||||| ||||||||||| ||||||||| ||||    
T  4920896 aagcacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 11218097 - 11218137
Alignment:
Q  189 ttgtgctataagttgcaaattaagttgtttatcccaacaag 229  Q
    |||||||||||| ||||||||| ||||||||||| ||||||    
T  11218097 ttgtgctataagctgcaaattatgttgtttatccaaacaag 11218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 47498989 - 47499032
Alignment:
Q  183 aagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||    
T  47498989 aagcacttgtgctataagctgcaaa-taagttgtttatccaaaca 47499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 44797801 - 44797757
Alignment:
Q  188 cttgtgctataagttgcaaattaagttgtttatcccaacaagcctt 233  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||    
T  44797801 cttgtgctataagttgcaaa-taagttgtttatccaaacaggcctt 44797757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 35064779 - 35064735
Alignment:
Q  183 aagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    |||| ||| |||||||| |||||||||||||||||||||| ||||    
T  35064779 aagcgcttttgctataaattgcaaattaagttgtttatccaaaca 35064735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 18279828 - 18279864
Alignment:
Q  183 aagcacttgtgctataagttgcaaattaagttgttta 219  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  18279828 aagcacttatgctataagttgcaaataaagttgttta 18279864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 41880648 - 41880692
Alignment:
Q  183 aagcacttgtgctataagttgcaaattaagttgtttatcccaaca 227  Q
    |||| ||||||||||||| |||||| |||||||||||||| ||||    
T  41880648 aagcgcttgtgctataagctgcaaagtaagttgtttatccaaaca 41880692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University