View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_24 (Length: 260)
Name: NF7590_low_24
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 42936709 - 42936485
Alignment:
| Q |
16 |
cacacgccactgttgcctttatctttgatcgttacttgacagatcacttaattattttggccaaacagatcacaatttaaaagagtggtaatttatttta |
115 |
Q |
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| T |
42936709 |
cacacaccactgttgcctttatcttcgatcgttacttgacagatcacttaattattttggtcaaacagatcacaatttaaaagagtggtaatttatttta |
42936610 |
T |
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| Q |
116 |
caggattaaagagcggtaacgtttagtttgacatttcttaatctaaaaaagatttgacatttttctctcttactggtactcgtattttgnnnnnnnagcg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42936609 |
caggattaaagagcggtaacgtttagtttgacatttcttaatctaaataagatttgacatttttctctcttactggtactcgtattttg-ttttttagcg |
42936511 |
T |
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| Q |
216 |
ttgatgcatgtttgaaatcacccagt |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42936510 |
ttgatgcatgtttgaaatcacccagt |
42936485 |
T |
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