View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_25 (Length: 249)
Name: NF7590_low_25
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_25 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 6844009 - 6843775
Alignment:
| Q |
15 |
tatctaagcggtcgtcaagcccatccaaaaatacatatacttagtcttcttggagaagggtgttgtaatgttggatatcaatggggcattccatcggatt |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6844009 |
tatctaagcggtcatcaagcccatccaaaaatacatatactcggtcttcttggaggagggtgttgtaatgttggatatcaatggggcattccatcggatt |
6843910 |
T |
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| Q |
115 |
tggacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6843909 |
tggacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccga |
6843810 |
T |
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| Q |
215 |
agatcgtacacctgagaggtgtcactgccatcaaa |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6843809 |
agatcgtacacctgagaggtgtcactgccatcaaa |
6843775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 21260888 - 21260654
Alignment:
| Q |
15 |
tatctaagcggtcgtcaagcccatccaaaaatacatatacttagtcttcttggagaagggtgttgtaatgttggatatcaatggggcattccatcggatt |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21260888 |
tatctaagcggtcatcaagcccatccaaaaatacatatactcggtcttcttggaggagggtgttgtaatgttggatatcaatggggcattccatcggatt |
21260789 |
T |
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| Q |
115 |
tggacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccga |
214 |
Q |
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| T |
21260788 |
tggacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccga |
21260689 |
T |
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| Q |
215 |
agatcgtacacctgagaggtgtcactgccatcaaa |
249 |
Q |
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| T |
21260688 |
agatcgtacacctgagaggtgtcactgccatcaaa |
21260654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 32224729 - 32224962
Alignment:
| Q |
17 |
tctaagcggtcgtcaagcccatccaaaaatacatatacttagtcttcttggagaagggtgttgtaatgttggatatcaatggggcattccatcggatttg |
116 |
Q |
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| T |
32224729 |
tctaagcagtcatccagtccatccaaaaatacataaacccgttcttcttggacaagggtattgtagtgttggatatcaattgggcattccatcgggtttg |
32224828 |
T |
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| Q |
117 |
gacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacgg-cttacccgacgccgaa |
215 |
Q |
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| T |
32224829 |
gacgatggaaatcaatctcacgccagagtccttggagatcgttataatatttttcaagagaaccaccggcctgtttcagatggtgtcacccgtcgccgaa |
32224928 |
T |
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| Q |
216 |
gatcgtacacctgagaggtgtcactgccatcaaa |
249 |
Q |
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| T |
32224929 |
ggtcgtatacttgagaggtgtcgttgccatcaaa |
32224962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 47801460 - 47801226
Alignment:
| Q |
15 |
tatctaagcggtcgtcaagcccatccaaaaatacatatacttagtcttcttggagaagggtgttgtaatgttggatatcaatggggcattccatcggatt |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47801460 |
tatctaagcggtcatcaagcccatccaaaaatacatatactcggtcttcttggaggagggtgttgtaatgttggatatcaatggggcattccatcggatt |
47801361 |
T |
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| Q |
115 |
tggacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47801360 |
tggacgacggaagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccga |
47801261 |
T |
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| Q |
215 |
agatcgtacacctgagaggtgtcactgccatcaaa |
249 |
Q |
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| T |
47801260 |
agatcgtacacctgagaggtgtcactgccatcaaa |
47801226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 56339 - 56125
Alignment:
| Q |
35 |
ccatccaaaaatacatatacttagtcttcttggagaagggtgttgtaatgttggatatcaatggggcattccatcggatttggacgacggaagtcgatct |
134 |
Q |
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||||||||||||||||| || |||||||||| |||||| ||||| |||||||||||||| |||||||| ||||| || ||||||||||| ||||||| |
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| T |
56339 |
ccatccaaaaatacataaaccggttcttcttggaaaagggtattgtagtgttggatatcaattgggcattctatcgggttcggacgacggaaatcgatct |
56240 |
T |
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| Q |
135 |
cacgccaaagtccttggagatcattataatatttctcaatagatccaccagcctgcttgagacggcttacccgacgccgaagatcgtacacctgagaggt |
234 |
Q |
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| T |
56239 |
cacgccagagtccttggagatcgttataatatttttctagagaaccaccagcctgtttcagatgtgtcacccgtcgtcgaaggtcatatacctgagaggt |
56140 |
T |
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| Q |
235 |
gtcactgccatcaaa |
249 |
Q |
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||| ||||| ||||| |
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| T |
56139 |
gtcgctgccgtcaaa |
56125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 41297806 - 41297751
Alignment:
| Q |
125 |
aagtcgatctcacgccaaagtccttggagatcattataatatttctcaatagatcc |
180 |
Q |
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||||| ||||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
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| T |
41297806 |
aagtctatctcacgccacagcccttgtagatcattataatatttttcaatcgatcc |
41297751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 38461842 - 38461892
Alignment:
| Q |
59 |
tcttcttggagaagggtgttgtaatgttggatatcaatggggcattccatc |
109 |
Q |
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| T |
38461842 |
tcttcttggacaagggtattgtagtgttggatatcaattgggcatgccatc |
38461892 |
T |
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