View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_27 (Length: 241)
Name: NF7590_low_27
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40276125 - 40275902
Alignment:
| Q |
1 |
ctcaagggctagaaaaagaggcttatccagctttggatgaattgacctctagaattagtactctcaaccttgaacgtgtaaggcaaatcaagaatcgttt |
100 |
Q |
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| T |
40276125 |
ctcaagggctagaaaaagaggcttatccagctttggatgaattgacctctcgaattagtactctcaaccttgaaagtgtaaggcaaatcaagaatcgttt |
40276026 |
T |
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| Q |
101 |
ggtctcactttttggtcgcgtacagaaggtaaatatatagtcatcaaagatatcttgtgatcatttatttctccatatgtgttcactctttgtttgatct |
200 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40276025 |
ggtctcactttttggtcgcgtacaaaaggtaaataaatagtcatcaaagatatcttgtgatcatttatttctccatatgtgttcactctttgtttgatct |
40275926 |
T |
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| Q |
201 |
ctcgtcatgtctcatcatctaatg |
224 |
Q |
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|| ||||||||||||||||||||| |
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| T |
40275925 |
cttgtcatgtctcatcatctaatg |
40275902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 39624677 - 39624558
Alignment:
| Q |
16 |
aagaggcttatccagctttggatgaattgacctctagaattagtactctcaaccttgaacgtgtaaggcaaatcaagaatcgtttggtctcactttttgg |
115 |
Q |
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||||| |||| |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |||||| ||| |
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| T |
39624677 |
aagagacttacccagctttgggtgaattgacctctcaaattagtactctcaatcttgaacgtgtaaggcagatcaagactcgtctggttgcactttctgg |
39624578 |
T |
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| Q |
116 |
tcgcgtacagaaggtaaata |
135 |
Q |
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| T |
39624577 |
tcgtgtacataaggtaaata |
39624558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 39634227 - 39634108
Alignment:
| Q |
16 |
aagaggcttatccagctttggatgaattgacctctagaattagtactctcaaccttgaacgtgtaaggcaaatcaagaatcgtttggtctcactttttgg |
115 |
Q |
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||||| |||| |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |||||| ||| |
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| T |
39634227 |
aagagacttacccagctttgggtgaattgacctctcaaattagtactctcaatcttgaacgtgtaaggcagatcaagactcgtctggttgcactttctgg |
39634128 |
T |
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| Q |
116 |
tcgcgtacagaaggtaaata |
135 |
Q |
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||| ||||| |||||||||| |
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| T |
39634127 |
tcgtgtacataaggtaaata |
39634108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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