View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7590_low_30 (Length: 230)
Name: NF7590_low_30
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 53446237 - 53446098
Alignment:
| Q |
75 |
gtaacaaagctagcaatgtgtggtggaactcaattcagcagcgtccaaatgaagtctccatggtaaccagacatacagtcctcaaatcattggtatcata |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53446237 |
gtaacaaagctagcaatgtgtggtggaactcaattcagcagcgtccaaataaagtctccatggtaaccagacatacagtcctcaaatcattggtatcata |
53446138 |
T |
|
| Q |
175 |
ttcatcatcattcaatttcaattttagtccacctagtttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53446137 |
ttcatcatcattcaatttcaattttagtccacctagtttt |
53446098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 45645275 - 45645234
Alignment:
| Q |
17 |
gaacaacacataatatatgtaaggtctaaagttcaaacctca |
58 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45645275 |
gaacaatacataatatatgtaaggtctaaagttcaaacctca |
45645234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 29872213 - 29872171
Alignment:
| Q |
15 |
atgaacaacacataatatatgtaaggtctaaagttcaaacctc |
57 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
29872213 |
atgaacaatacataatatatgcaaggtctaaggttcaaacctc |
29872171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 7652125 - 7652166
Alignment:
| Q |
19 |
acaacacataatatatgtaaggtctaaagttcaaacctcaga |
60 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
7652125 |
acaatacataatatatgtaaggtctgaagttcgaacctcaga |
7652166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University