View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7590_low_4 (Length: 610)
Name: NF7590_low_4
Description: NF7590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7590_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 77 - 589
Target Start/End: Complemental strand, 55061295 - 55060782
Alignment:
| Q |
77 |
tttctgaagttttcaacgacacaaaacttcgtcaattatctggaaacttagccgttggtcacgttcgttattcaactgcaggccaatccatgctcaaaaa |
176 |
Q |
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| T |
55061295 |
tttccgaagttttcaacgacacaaaactccgtcaattacctggaaacttagccattggtcacatccgttattcaactgcaggccaatccatgctcaaaaa |
55061196 |
T |
|
| Q |
177 |
cgatcaaccttttgttgcaggttaccgttttggttccgttggtgttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaa |
276 |
Q |
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| T |
55061195 |
cgttcaaccttttgttgcaggttaccgttttggttccgttggtgttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaa |
55061096 |
T |
|
| Q |
277 |
tctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacc-ttttatagcgataattgttgaagcg |
375 |
Q |
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| T |
55061095 |
tctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttttatagcgagaattgttgaagcg |
55060996 |
T |
|
| Q |
376 |
tgtgaaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggttttcgacctctggttatgggaa |
475 |
Q |
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| T |
55060995 |
tgtgaaaaagttaaaggtgcttattcaattgtgtttgttactgaagataaactttttgttgtcagagatccttttggttttcgacctctggttatgggaa |
55060896 |
T |
|
| Q |
476 |
gaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggtttgtcctggtgagattgtggt |
575 |
Q |
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| T |
55060895 |
gaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggtttatcctggtgagattgtggt |
55060796 |
T |
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| Q |
576 |
tgtggataaaagtg |
589 |
Q |
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| T |
55060795 |
tgtggataaaagtg |
55060782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 118 - 567
Target Start/End: Complemental strand, 27357437 - 27356988
Alignment:
| Q |
118 |
ggaaacttagccgttggtcacgttcgttattcaactgcaggccaatccatgctcaaaaacgatcaaccttttgttgcaggttaccgttttggttccgttg |
217 |
Q |
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|||| ||||||| | || || ||||||||||| ||||| || || |||||| | || || | ||||||||||||||| || |||||||||||||| |||| |
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| T |
27357437 |
ggaagcttagccatcggccatgttcgttattctactgctggacagtccatgttgaagaatgttcaaccttttgttgctgggtaccgttttggttctgttg |
27357338 |
T |
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| Q |
218 |
gtgttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaatctggttcaattttcaacactacttctgatactgaagtttt |
317 |
Q |
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| T |
27357337 |
gtgttgctcataacggtaatttagttaattatcgtactttaagagctaagcttgaagaaaaaggttcgatttttaacactacttctgatactgaagttgt |
27357238 |
T |
|
| Q |
318 |
gcttcatcttattgcaacttcaaatcatagaccttttatagcgataattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttact |
417 |
Q |
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| T |
27357237 |
tcttcatttgattgctacttcaaagcatagaccttttattttaagaattgttgatgcatgtgagaagcttgaaggtgcttattcgattgtgtttgttact |
27357138 |
T |
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| Q |
418 |
aaagataaacttgttgttgtcagagatccttttggttttcgacctctggttatgggaagaagaagtaatagttctgttgtttttgcttcggaaacatgtg |
517 |
Q |
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| T |
27357137 |
gaggataagcttgttgctgtgagggatccatttgggtttaggcctttggttatggggaggagaagtaatggtgctgttgtttttgcttctgagacttgtg |
27357038 |
T |
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| Q |
518 |
cacttgatttgattgaagctacttatgaaagagaggtttgtcctggtgag |
567 |
Q |
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| T |
27357037 |
ctcttgatttgattgaagctacttatgagagggaagttttccctggtgag |
27356988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 503
Target Start/End: Complemental strand, 44334166 - 44334066
Alignment:
| Q |
407 |
tgtttgttactaaagataaac---ttgttgttgtcagag-atccttttggttttcgacctctggttatgggaagaagaagtaatagttctgttgtttttg |
502 |
Q |
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||||||||||| ||||||||| |||||| | |||||| |||||||| ||||||||||| |||||||| |||| || ||||| ||||||| ||||||| |
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| T |
44334166 |
tgtttgttactgaagataaacaacttgttgctatcagaggatcctttttgttttcgacctttggttatgtgaagtagtagtaacggttctgtagtttttg |
44334067 |
T |
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| Q |
503 |
c |
503 |
Q |
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| T |
44334066 |
c |
44334066 |
T |
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